Gm49616 Gene Detail

Summary

• Symbol
  Gm49616
• Name
  predicted gene, 49616

• Feature Type
  unclassified gene
• IDs
  MGI:6215034
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr14:26960019-26962451 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  154 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6215034	unclassified gene	Chr14:26960019-26962451 (+)
129S1/SvImJ	ENSMUSG00200015375	unclassified gene	Chr14:18770570-18773004 (+)
A/J	ENSMUSG00195022331	unclassified gene	Chr14:19838678-19841112 (+)
AKR/J	ENSMUSG00220028041	unclassified gene	Chr14:18942700-18945134 (+)
BALB/cJ	ENSMUSG00180042546	unclassified gene	Chr14:18930544-18932978 (+)
C3H/HeJ	ENSMUSG00175023652	unclassified gene	Chr14:18998065-19000499 (+)
C57BL/6NJ	ENSMUSG00215036680	unclassified gene	Chr14:19241506-19243938 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032612	unclassified gene	Chr14:19101667-19104133 (+)
CBA/J	ENSMUSG00210027325	unclassified gene	Chr14:19232901-19235335 (+)
DBA/2J	ENSMUSG00185042985	unclassified gene	Chr14:23523778-23526210 (+)
FVB/NJ	ENSMUSG00205039008	unclassified gene	Chr14:19060774-19063208 (+)
JF1/MsJ	ENSUMUG00000050365	unclassified gene	Chr14:30782561-30784927 (+)
LP/J	ENSMUSG00230040321	unclassified gene	Chr14:30799505-30801939 (+)
NOD/ShiLtJ	ENSMUSG00190041332	unclassified gene	Chr14:19250340-19252774 (+)
NZO/HlLtJ	ENSMUSG00225038156	unclassified gene	Chr14:25126527-25128959 (+)
PWK/PhJ	ENSLUMG00010022107	unclassified gene	Chr14:7381149-7383479 (+)
SPRET/EiJ	ENSMSPG00010042704	unclassified gene	Chr14:20892463-20894914 (+)
WSB/EiJ	ENSIUOG00005034882	unclassified gene	Chr14:19080459-19082943 (+)

Homology

• Gene Tree
  Gm49616
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000114888 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114888	Ensembl Gene Model | MGI Sequence Detail	2433	C57BL/6J

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm49616:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr124732	Chr14:26959966-26959969 (+)	-51 bp
Tssr124733	Chr14:26959975-26960003 (+)	-30 bp
Tssr124734	Chr14:26960005-26960020 (+)	-6 bp