Gm49610 Pseudogene Detail

Summary

• Symbol
  Gm49610
• Name
  predicted gene, 49610

• Feature Type
  pseudogene
• IDs
  MGI:6215026
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:61179200-61179615 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  133 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6215026	pseudogene	Chr16:61179200-61179615 (+)
129S1/SvImJ	ENSMUSG00200021412	pseudogene	Chr16:58150080-58150493 (+)
A/J	ENSMUSG00195025283	pseudogene	Chr16:57738605-57738986 (+)
AKR/J	ENSMUSG00220020246	pseudogene	Chr16:58092213-58092598 (+)
BALB/cJ	ENSMUSG00180023811	pseudogene	Chr16:57912876-57913257 (+)
C3H/HeJ	ENSMUSG00175018040	pseudogene	Chr16:58190345-58190760 (+)
C57BL/6NJ	ENSMUSG00215026340	pseudogene	Chr16:57998273-57998690 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005014280	pseudogene	Chr16:58117269-58117674 (+)
CBA/J	ENSMUSG00210019689	pseudogene	Chr16:58159905-58160322 (+)
DBA/2J	ENSMUSG00185025506	pseudogene	Chr16:58090198-58090581 (+)
FVB/NJ	ENSMUSG00205010424	pseudogene	Chr16:57870667-57871038 (+)
JF1/MsJ	ENSUMUG00000027383	pseudogene	Chr16:58281723-58282130 (+)
LP/J	ENSMUSG00230008766	pseudogene	Chr16:60649644-60650057 (+)
NOD/ShiLtJ	ENSMUSG00190007494	pseudogene	Chr16:58091689-58092058 (+)
NZO/HlLtJ	ENSMUSG00225036229	pseudogene	Chr16:63891152-63891539 (+)
PWK/PhJ	ENSLUMG00010012020	pseudogene	Chr16:57963579-57963986 (+)
SPRET/EiJ	ENSMSPG00010001635	pseudogene	Chr16:58554813-58555184 (+)
WSB/EiJ	ENSIUOG00005009558	pseudogene	Chr16:58233357-58233763 (+)

Homology

• Gene Tree
  Gm49610
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000116956 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116956	Ensembl Gene Model | MGI Sequence Detail	416	C57BL/6J
transcript	ENSMUST00000232291	Ensembl | MGI Sequence Detail	416	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;