Gm49587 Gene Detail

Summary

• Symbol
  Gm49587
• Name
  predicted gene, 49587

• Feature Type
  lncRNA gene
• IDs
  MGI:6214989
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:76179995-76195014 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  541 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6214989	lncRNA gene	Chr16:76179995-76195014 (+)
129S1/SvImJ	ENSMUSG00200016233	lncRNA gene	Chr16:73057843-73072874 (+)
A/J	ENSMUSG00195023805	lncRNA gene	Chr16:72822228-72837339 (+)
AKR/J	ENSMUSG00220017923	lncRNA gene	Chr16:73017340-73032363 (+)
BALB/cJ	ENSMUSG00180002156	lncRNA gene	Chr16:72916906-72931928 (+)
C3H/HeJ	ENSMUSG00175009410	lncRNA gene	Chr16:73190290-73205310 (+)
C57BL/6NJ	ENSMUSG00215001761	lncRNA gene	Chr16:73027450-73042470 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005007450	lncRNA gene	Chr16:72887047-72902731 (+)
CBA/J	ENSMUSG00210019783	lncRNA gene	Chr16:73145146-73160164 (+)
DBA/2J	ENSMUSG00185005359	lncRNA gene	Chr16:73057084-73072192 (+)
FVB/NJ	ENSMUSG00205014260	lncRNA gene	Chr16:72932938-72947958 (+)
JF1/MsJ	ENSUMUG00000012104	lncRNA gene	Chr16:73252198-73267855 (+)
LP/J	ENSMUSG00230020676	lncRNA gene	Chr16:75632890-75647921 (+)
NOD/ShiLtJ	ENSMUSG00190011670	lncRNA gene	Chr16:73071443-73086461 (+)
NZO/HlLtJ	ENSMUSG00225029677	lncRNA gene	Chr16:78854764-78869788 (+)
PWK/PhJ	ENSLUMG00010005441	lncRNA gene	Chr16:72900205-72915906 (+)
SPRET/EiJ	ENSMSPG00010015119	lncRNA gene	Chr16:73753038-73767269 (+)
WSB/EiJ	ENSIUOG00005017329	lncRNA gene	Chr16:73295673-73310725 (+)

Homology

• Gene Tree
  Gm49587
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Genomic Mutations
  1 involving Gm49587
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000116968 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116968	Ensembl Gene Model | MGI Sequence Detail	15020	C57BL/6J
transcript	ENSMUST00000300801	Ensembl | MGI Sequence Detail	1388	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:117029 Davisson M, et al., Impact of trisomy on fertility and meiosis in male mice. Hum Reprod. 2007 Feb;22(2):468-76