Gm49578 Pseudogene Detail

Summary

• Symbol
  Gm49578
• Name
  predicted gene, 49578

• Feature Type
  pseudogene
• IDs
  MGI:6214975
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:80507832-80508379 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  174 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6214975	pseudogene	Chr16:80507832-80508379 (+)
129S1/SvImJ	ENSMUSG00200015995	pseudogene	Chr16:77407862-77408408 (+)
A/J	ENSMUSG00195023926	pseudogene	Chr16:77171066-77171612 (+)
AKR/J	ENSMUSG00220018098	pseudogene	Chr16:77355773-77356320 (+)
BALB/cJ	ENSMUSG00180002207	pseudogene	Chr16:77242399-77242946 (+)
C3H/HeJ	ENSMUSG00175009242	pseudogene	Chr16:77540288-77540835 (+)
C57BL/6NJ	ENSMUSG00215001774	pseudogene	Chr16:77368001-77368548 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005007730	pseudogene	Chr16:77110872-77111417 (+)
CBA/J	ENSMUSG00210019802	pseudogene	Chr16:77468572-77469119 (+)
DBA/2J	ENSMUSG00185005304	pseudogene	Chr16:77414435-77414981 (+)
FVB/NJ	ENSMUSG00205014735	pseudogene	Chr16:77251071-77251617 (+)
JF1/MsJ	ENSUMUG00000016134	pseudogene	Chr16:77532256-77532802 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190011328	pseudogene	Chr16:77403015-77403561 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010005207	pseudogene	Chr16:77208984-77209530 (+)
SPRET/EiJ	ENSMSPG00010015227	pseudogene	Chr16:78228545-78229092 (+)
WSB/EiJ	ENSIUOG00005017544	pseudogene	Chr16:77374473-77375019 (+)

Homology

• Gene Tree
  Gm49578
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Genomic Mutations
  1 involving Gm49578
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000116918 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116918	Ensembl Gene Model | MGI Sequence Detail	548	C57BL/6J
transcript	ENSMUST00000231460	Ensembl | MGI Sequence Detail	548	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:117029 Davisson M, et al., Impact of trisomy on fertility and meiosis in male mice. Hum Reprod. 2007 Feb;22(2):468-76