Gm49574 Gene Detail

Summary

• Symbol
  Gm49574
• Name
  predicted gene, 49574

• Feature Type
  lncRNA gene
• IDs
  MGI:6214968
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:58058467-58069602 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  236 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6214968	lncRNA gene	Chr16:58058467-58069602 (+)
129S1/SvImJ	ENSMUSG00200021287	lncRNA gene	Chr16:54964949-54976109 (+)
A/J	ENSMUSG00195025798	lncRNA gene	Chr16:54598369-54603223 (+)
AKR/J	ENSMUSG00220020024	lncRNA gene	Chr16:54953840-54968605 (+)
BALB/cJ	ENSMUSG00180024715	lncRNA gene	Chr16:54770464-54775314 (+)
C3H/HeJ	ENSMUSG00175018202	lncRNA gene	Chr16:55045232-55056374 (+)
C57BL/6NJ	ENSMUSG00215022421	lncRNA gene	Chr16:54864853-54875992 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005014311	lncRNA gene	Chr16:55056696-55061588 (+)
CBA/J	ENSMUSG00210019747	lncRNA gene	Chr16:55059569-55064391 (+)
DBA/2J	ENSMUSG00185025687	lncRNA gene	Chr16:54947946-54952800 (+)
FVB/NJ	ENSMUSG00205010949	lncRNA gene	Chr16:54724915-54729445 (+)
JF1/MsJ	ENSUMUG00000027520	lncRNA gene	Chr16:55207542-55212368 (+)
LP/J	ENSMUSG00230009147	lncRNA gene	Chr16:57486978-57498121 (+)
NOD/ShiLtJ	ENSMUSG00190007304	lncRNA gene	Chr16:54967465-54978600 (+)
NZO/HlLtJ	ENSMUSG00225026377	lncRNA gene	Chr16:60593862-60604997 (+)
PWK/PhJ	ENSLUMG00010012159	lncRNA gene	Chr16:54967331-54972191 (+)
SPRET/EiJ	ENSMSPG00010001628	lncRNA gene	Chr16:55479290-55484253 (+)
WSB/EiJ	ENSIUOG00005009317	lncRNA gene	Chr16:55161313-55172459 (+)

Homology

• Gene Tree
  Gm49574
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000116717 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116717	Ensembl Gene Model | MGI Sequence Detail	11136	C57BL/6J
transcript	ENSMUST00000231686	Ensembl | MGI Sequence Detail	1544	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;