Gm49572 Pseudogene Detail

Summary

• Symbol
  Gm49572
• Name
  predicted gene, 49572

• Feature Type
  pseudogene
• IDs
  MGI:6214965
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:86555787-86556264 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  116 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6214965	pseudogene	Chr16:86555787-86556264 (+)
129S1/SvImJ	ENSMUSG00200038703	pseudogene	Chr16:83458626-83459103 (+)
A/J	ENSMUSG00195030840	pseudogene	Chr16:83254135-83254612 (+)
AKR/J	ENSMUSG00220016129	pseudogene	Chr16:83421112-83421589 (+)
BALB/cJ	ENSMUSG00180016308	pseudogene	Chr16:83299491-83299968 (+)
C3H/HeJ	ENSMUSG00175016888	pseudogene	Chr16:83629802-83630279 (+)
C57BL/6NJ	ENSMUSG00215031805	pseudogene	Chr16:83421459-83421936 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005020939	pseudogene	Chr16:83020678-83021155 (+)
CBA/J	ENSMUSG00210042278	pseudogene	Chr16:83525344-83525821 (+)
DBA/2J	ENSMUSG00185036020	pseudogene	Chr16:83472261-83472738 (+)
FVB/NJ	ENSMUSG00205029292	pseudogene	Chr16:83280590-83281067 (+)
JF1/MsJ	ENSUMUG00000047129	pseudogene	Chr16:83567667-83568144 (+)
LP/J	ENSMUSG00230036398	pseudogene	Chr16:86019722-86020199 (+)
NOD/ShiLtJ	ENSMUSG00190025885	pseudogene	Chr16:83471079-83471556 (+)
NZO/HlLtJ	ENSMUSG00225031449	pseudogene	Chr16:89155890-89156367 (+)
PWK/PhJ	ENSLUMG00010014176	pseudogene	Chr16:83223170-83223647 (+)
SPRET/EiJ	ENSMSPG00010031177	pseudogene	Chr16:84329496-84329973 (+)
WSB/EiJ	ENSIUOG00005020606	pseudogene	Chr16:83435545-83436022 (+)

Homology

• Gene Tree
  Gm49572
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Genomic Mutations
  1 involving Gm49572
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000116906 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116906	Ensembl Gene Model | MGI Sequence Detail	478	C57BL/6J
transcript	ENSMUST00000232053	Ensembl | MGI Sequence Detail	478	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:117029 Davisson M, et al., Impact of trisomy on fertility and meiosis in male mice. Hum Reprod. 2007 Feb;22(2):468-76