Gm49566 Gene Detail

Summary

• Symbol
  Gm49566
• Name
  predicted gene, 49566

• Feature Type
  lncRNA gene
• IDs
  MGI:6214956
  NCBI Gene: 115488613
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:20059407-20060864 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  148 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6214956	lncRNA gene	Chr16:20059092-20063250 (+)
129S1/SvImJ	ENSMUSG00200046800	lncRNA gene	Chr16:17057124-17058211 (+)
A/J	ENSMUSG00195036508	lncRNA gene	Chr16:16614653-16615740 (+)
AKR/J	ENSMUSG00220047231	lncRNA gene	Chr16:16932325-16933412 (+)
BALB/cJ	ENSMUSG00180041180	lncRNA gene	Chr16:16855910-16856997 (+)
C3H/HeJ	ENSMUSG00175051338	lncRNA gene	Chr16:17000974-17002060 (+)
C57BL/6NJ	ENSMUSG00215042623	lncRNA gene	Chr16:16721914-16723001 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005046396	lncRNA gene	Chr16:17342971-17344070 (+)
CBA/J	ENSMUSG00210047604	lncRNA gene	Chr16:17022765-17023852 (+)
DBA/2J	ENSMUSG00185034451	lncRNA gene	Chr16:16961507-16962594 (+)
FVB/NJ	ENSMUSG00205049020	lncRNA gene	Chr16:16963980-16965067 (+)
JF1/MsJ	ENSUMUG00000054778	lncRNA gene	Chr16:17143564-17144650 (+)
LP/J	ENSMUSG00230047507	lncRNA gene	Chr16:19540796-19541883 (+)
NOD/ShiLtJ	ENSMUSG00190050571	lncRNA gene	Chr16:17103040-17104127 (+)
NZO/HlLtJ	ENSMUSG00225038548	lncRNA gene	Chr16:22786573-22787660 (+)
PWK/PhJ	ENSLUMG00010049530	lncRNA gene	Chr16:16967962-16969048 (+)
SPRET/EiJ	ENSMSPG00010048176	lncRNA gene	Chr16:16844727-16845818 (+)
WSB/EiJ	ENSIUOG00005046062	lncRNA gene	Chr16:17159277-17160364 (+)

Homology

• Gene Tree
  Gm49566
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  4

• Ensembl
  ENSMUSG00000116913 (Evidence)
• NCBI Gene
  115488613

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116913	Ensembl Gene Model | MGI Sequence Detail	1458	C57BL/6J
transcript	ENSMUST00000327432	Ensembl | MGI Sequence Detail	374	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;