Gm49536 Pseudogene Detail

Summary

• Symbol
  Gm49536
• Name
  predicted gene, 49536

• Feature Type
  pseudogene
• IDs
  MGI:6155238
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:14818186-14818353 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  75 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6155238	pseudogene	Chr16:14818186-14818353 (+)
129S1/SvImJ	ENSMUSG00200048678	pseudogene	Chr16:11801027-11801194 (+)
A/J	ENSMUSG00195035057	pseudogene	Chr16:11369140-11369307 (+)
AKR/J	ENSMUSG00220046915	pseudogene	Chr16:11665499-11665666 (+)
BALB/cJ	ENSMUSG00180039915	pseudogene	Chr16:11599176-11599343 (+)
C3H/HeJ	ENSMUSG00175051275	pseudogene	Chr16:11755397-11755564 (+)
C57BL/6NJ	ENSMUSG00215042861	pseudogene	Chr16:11483233-11483400 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005046319	pseudogene	Chr16:11650392-11650559 (+)
CBA/J	ENSMUSG00210048608	pseudogene	Chr16:11772374-11772541 (+)
DBA/2J	ENSMUSG00185035075	pseudogene	Chr16:11717849-11718016 (+)
FVB/NJ	ENSMUSG00205046394	pseudogene	Chr16:11721743-11721910 (+)
JF1/MsJ	ENSUMUG00000054594	pseudogene	Chr16:11799686-11799853 (+)
LP/J	ENSMUSG00230046539	pseudogene	Chr16:14296418-14296585 (+)
NOD/ShiLtJ	ENSMUSG00190049065	pseudogene	Chr16:11857888-11858055 (+)
NZO/HlLtJ	ENSMUSG00225032375	pseudogene	Chr16:17541665-17541832 (+)
PWK/PhJ	ENSLUMG00010050644	pseudogene	Chr16:11679190-11679357 (+)
SPRET/EiJ	ENSMSPG00010046510	pseudogene	Chr16:11664932-11665099 (+)
WSB/EiJ	ENSIUOG00005044323	pseudogene	Chr16:11808146-11808306 (+)

Homology

• Gene Tree
  Gm49536
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000116317 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116317	Ensembl Gene Model | MGI Sequence Detail	168	C57BL/6J
transcript	ENSMUST00000230174	Ensembl | MGI Sequence Detail	168	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;