Gm49517 Pseudogene Detail

Summary

• Symbol
  Gm49517
• Name
  predicted gene, 49517

• Feature Type
  pseudogene
• IDs
  MGI:6155210
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:14176296-14176761 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  110 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6155210	pseudogene	Chr16:14176296-14176761 (+)
129S1/SvImJ	ENSMUSG00200046483	pseudogene	Chr16:11159204-11159669 (+)
A/J	ENSMUSG00195035632	pseudogene	Chr16:10724186-10724651 (+)
AKR/J	ENSMUSG00220045532	pseudogene	Chr16:11021033-11021498 (+)
BALB/cJ	ENSMUSG00180043645	pseudogene	Chr16:10961892-10962357 (+)
C3H/HeJ	ENSMUSG00175051132	pseudogene	Chr16:11136494-11136959 (+)
C57BL/6NJ	ENSMUSG00215042933	pseudogene	Chr16:10841390-10841855 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005046032	pseudogene	Chr16:11020173-11020638 (+)
CBA/J	ENSMUSG00210047276	pseudogene	Chr16:11153461-11153926 (+)
DBA/2J	ENSMUSG00185035831	pseudogene	Chr16:11098994-11099459 (+)
FVB/NJ	ENSMUSG00205048214	pseudogene	Chr16:11081209-11081674 (+)
JF1/MsJ	ENSUMUG00000052775	pseudogene	Chr16:11183161-11183626 (+)
LP/J	ENSMUSG00230046547	pseudogene	Chr16:13654664-13655129 (+)
NOD/ShiLtJ	ENSMUSG00190050255	pseudogene	Chr16:11216085-11216550 (+)
NZO/HlLtJ	ENSMUSG00225032378	pseudogene	Chr16:16899938-16900403 (+)
PWK/PhJ	ENSLUMG00010050211	pseudogene	Chr16:11046105-11046570 (+)
SPRET/EiJ	ENSMSPG00010046567	pseudogene	Chr16:11018267-11018732 (+)
WSB/EiJ	ENSIUOG00005046129	pseudogene	Chr16:11174507-11174972 (+)

Homology

• Gene Tree
  Gm49517
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000116025 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116025	Ensembl Gene Model | MGI Sequence Detail	466	C57BL/6J
transcript	ENSMUST00000229451	Ensembl | MGI Sequence Detail	466	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm49517:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr4798	Chr16:14175486-14175506 (+)	-800 bp