Gm49516 Pseudogene Detail

Summary

• Symbol
  Gm49516
• Name
  predicted gene, 49516

• Feature Type
  pseudogene
• IDs
  MGI:6155209
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:23671741-23672716 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  144 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6155209	pseudogene	Chr16:23671741-23672716 (+)
129S1/SvImJ	ENSMUSG00200036284	pseudogene	Chr16:20675844-20676819 (+)
A/J	ENSMUSG00195029922	pseudogene	Chr16:20230432-20231407 (+)
AKR/J	ENSMUSG00220033709	pseudogene	Chr16:20549858-20550833 (+)
BALB/cJ	ENSMUSG00180031231	pseudogene	Chr16:20470989-20471964 (+)
C3H/HeJ	ENSMUSG00175038497	pseudogene	Chr16:20624658-20625633 (+)
C57BL/6NJ	ENSMUSG00215025690	pseudogene	Chr16:20343095-20344070 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005037469	pseudogene	Chr16:20945674-20946648 (+)
CBA/J	ENSMUSG00210037247	pseudogene	Chr16:20646284-20647259 (+)
DBA/2J	ENSMUSG00185019585	pseudogene	Chr16:20585100-20586075 (+)
FVB/NJ	ENSMUSG00205024575	pseudogene	Chr16:20577051-20578026 (+)
JF1/MsJ	ENSUMUG00000042431	pseudogene	Chr16:20800722-20801696 (+)
LP/J	ENSMUSG00230034404	pseudogene	Chr16:23155253-23156228 (+)
NOD/ShiLtJ	ENSMUSG00190039074	pseudogene	Chr16:20717715-20718690 (+)
NZO/HlLtJ	ENSMUSG00225039370	pseudogene	Chr16:26406501-26407476 (+)
PWK/PhJ	ENSLUMG00010033395	pseudogene	Chr16:20619559-20620533 (+)
SPRET/EiJ	ENSMSPG00010020144	pseudogene	Chr16:20507982-20508943 (+)
WSB/EiJ	ENSIUOG00005035797	pseudogene	Chr16:20830055-20831030 (+)

Homology

• Gene Tree
  Gm49516
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000116335 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116335	Ensembl Gene Model | MGI Sequence Detail	976	C57BL/6J
transcript	ENSMUST00000229023	Ensembl | MGI Sequence Detail	880	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;