Gm49514 Pseudogene Detail

Summary

• Symbol
  Gm49514
• Name
  predicted gene, 49514

• Feature Type
  pseudogene
• IDs
  MGI:6155207
  NCBI Gene: 115488622
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:23333020-23333812 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  142 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6155207	pseudogene	Chr16:23333019-23333816 (+)
129S1/SvImJ	ENSMUSG00200047586	pseudogene	Chr16:20336933-20337725 (+)
A/J	ENSMUSG00195036712	pseudogene	Chr16:19891454-19892246 (+)
AKR/J	ENSMUSG00220046715	pseudogene	Chr16:20210883-20211675 (+)
BALB/cJ	ENSMUSG00180042542	pseudogene	Chr16:20132049-20132841 (+)
C3H/HeJ	ENSMUSG00175050673	pseudogene	Chr16:20276974-20277766 (+)
C57BL/6NJ	ENSMUSG00215043179	pseudogene	Chr16:20004165-20004957 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005037578	pseudogene	Chr16:20609495-20610287 (+)
CBA/J	ENSMUSG00210047998	pseudogene	Chr16:20298605-20299397 (+)
DBA/2J	ENSMUSG00185034423	pseudogene	Chr16:20237425-20238217 (+)
FVB/NJ	ENSMUSG00205048024	pseudogene	Chr16:20238101-20238893 (+)
JF1/MsJ	ENSUMUG00000042460	pseudogene	Chr16:20459360-20460154 (+)
LP/J	ENSMUSG00230034865	pseudogene	Chr16:22816378-22817170 (+)
NOD/ShiLtJ	ENSMUSG00190039109	pseudogene	Chr16:20378808-20379600 (+)
NZO/HlLtJ	ENSMUSG00225039522	pseudogene	Chr16:26067573-26068365 (+)
PWK/PhJ	ENSLUMG00010033415	pseudogene	Chr16:20283543-20284337 (+)
SPRET/EiJ	ENSMSPG00010048536	pseudogene	Chr16:20162960-20163752 (+)
WSB/EiJ	ENSIUOG00005035808	pseudogene	Chr16:20482350-20483142 (+)

Homology

• Gene Tree
  Gm49514
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000116481 (Evidence)
• NCBI Gene
  115488622

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116481	Ensembl Gene Model | MGI Sequence Detail	793	C57BL/6J
transcript	ENSMUST00000229821	Ensembl | MGI Sequence Detail	793	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;