Gm49504 Gene Detail

Summary

• Symbol
  Gm49504
• Name
  predicted gene, 49504

• Feature Type
  lncRNA gene
• IDs
  MGI:6155192
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:3164776-3166796 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  46 from dbSNP Build 142
• Strain Annotations
  22

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6155192	lncRNA gene	Chr16:3164776-3166796 (+)
129S1/SvImJ	ENSMUSG00200011769	lncRNA gene	Chr16:155427-157446 (+)
A/J	ENSMUSG00195052969	lncRNA gene	Chr19:157617-159638 (+)
AKR/J	ENSMUSG00220017306	lncRNA gene	Chr16:123794-125814 (+)
BALB/cJ	ENSMUSG00180051243	lncRNA gene	Chr19:712512-714532 (+)
C3H/HeJ	ENSMUSG00175029734	lncRNA gene	Chr16:155151-157171 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017797	lncRNA gene	Chr18:93704-95743 (+)
CAST/EiJ	ENSTCUG00005033222	lncRNA gene	Chr16:156244-158263 (+)
CBA/J	ENSMUSG00210012050	lncRNA gene	Chr16:161830-163849 (+)
DBA/2J	ENSMUSG00185010560	lncRNA gene	Chr16:110239-112259 (+)
DBA/2J	ENSMUSG00185054144	lncRNA gene	Chr19:153517-155539 (+)
FVB/NJ	ENSMUSG00205052234	lncRNA gene	Chr19:148100-150119 (+)
JF1/MsJ	ENSUMUG00000043920	lncRNA gene	Chr18:140727-142761 (+)
JF1/MsJ	ENSUMUG00000056813	lncRNA gene	Chr19:155465-157479 (+)
LP/J	ENSMUSG00230054411	lncRNA gene	Chr19:1073300-1075322 (+)
LP/J	ENSMUSG00230012184	lncRNA gene	Chr16:2651299-2653319 (+)
NOD/ShiLtJ	ENSMUSG00190026684	lncRNA gene	Chr16:154779-156799 (+)
NZO/HlLtJ	ENSMUSG00225027242	lncRNA gene	Chr19:4781930-4783952 (+)
NZO/HlLtJ	ENSMUSG00225023211	lncRNA gene	Chr16:5893617-5895637 (+)
PWK/PhJ	ENSLUMG00010010418	lncRNA gene	Chr18:314536-316569 (+)
PWK/PhJ	ENSLUMG00010017786	lncRNA gene	Chr16:111538-113553 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005016984	lncRNA gene	Chr16:151712-153729 (+)

Homology

• Gene Tree
  Gm49504
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24

• Ensembl
  ENSMUSG00000116389 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116389	Ensembl Gene Model | MGI Sequence Detail	2021	C57BL/6J
transcript	ENSMUST00000230278	Ensembl | MGI Sequence Detail	1000	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;