Gm49497 Gene Detail

Summary

• Symbol
  Gm49497
• Name
  predicted gene, 49497

• Feature Type
  lncRNA gene
• IDs
  MGI:6155179
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr15:61056000-61113185 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1890 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6155179	lncRNA gene	Chr15:61056000-61113185 (+)
129S1/SvImJ	ENSMUSG00200031704	lncRNA gene	Chr15:58062539-58122424 (+)
A/J	ENSMUSG00195006594	lncRNA gene	Chr15:58115850-58172769 (+)
AKR/J	ENSMUSG00220021515	lncRNA gene	Chr15:58097024-58153941 (+)
BALB/cJ	ENSMUSG00180009503	lncRNA gene	Chr15:58025382-58085266 (+)
C3H/HeJ	ENSMUSG00175005111	lncRNA gene	Chr15:58299387-58359288 (+)
C57BL/6NJ	ENSMUSG00215012887	lncRNA gene	Chr15:58036913-58093830 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006931	lncRNA gene	Chr15:57852982-57911412 (+)
CBA/J	ENSMUSG00210007223	lncRNA gene	Chr15:58131105-58191006 (+)
DBA/2J	ENSMUSG00185027986	lncRNA gene	Chr15:58085611-58142528 (+)
FVB/NJ	ENSMUSG00205006723	lncRNA gene	Chr15:57842105-57899023 (+)
JF1/MsJ	ENSUMUG00000033265	lncRNA gene	Chr15:57837586-57898752 (+)
LP/J	ENSMUSG00230008149	lncRNA gene	Chr15:61409817-61469699 (+)
NOD/ShiLtJ	ENSMUSG00190018013	lncRNA gene	Chr15:58104006-58163889 (+)
NZO/HlLtJ	ENSMUSG00225027197	lncRNA gene	Chr15:61694149-61751064 (+)
PWK/PhJ	ENSLUMG00010030848	lncRNA gene	Chr15:58121493-58182602 (+)
SPRET/EiJ	ENSMSPG00010027622	lncRNA gene	Chr15:59379813-59448902 (+)
WSB/EiJ	ENSIUOG00005006564	lncRNA gene	Chr15:58160464-58217358 (+)

Homology

• Gene Tree
  Gm49497
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Transposon induced
  1
• Genomic Mutations
  1 involving Gm49497
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000116000 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116000	Ensembl Gene Model | MGI Sequence Detail	57186	C57BL/6J
transcript	ENSMUST00000341148	Ensembl | MGI Sequence Detail	1103	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:212391 Uslu VV, et al., Long-range enhancers regulating Myc expression are required for normal facial morphogenesis. Nat Genet. 2014 Jul;46(7):753-8