Gm49492 Gene Detail

Summary

• Symbol
  Gm49492
• Name
  predicted gene, 49492

• Feature Type
  lncRNA gene
• IDs
  MGI:6155169
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr15:100498085-100500647 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  155 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6155169	lncRNA gene	Chr15:100498085-100500647 (+)
129S1/SvImJ	ENSMUSG00200052700	lncRNA gene	Chr15:97702568-97705250 (+)
A/J	ENSMUSG00195046769	lncRNA gene	Chr15:97581731-97584298 (+)
AKR/J	ENSMUSG00220049383	lncRNA gene	Chr15:97574935-97577500 (+)
BALB/cJ	ENSMUSG00180048831	lncRNA gene	Chr15:97479590-97482169 (+)
C3H/HeJ	ENSMUSG00175049164	lncRNA gene	Chr15:97761714-97764280 (+)
C57BL/6NJ	ENSMUSG00215051802	lncRNA gene	Chr15:97536813-97539376 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005046818	lncRNA gene	Chr15:97011148-97013759 (+)
CBA/J	ENSMUSG00210032928	lncRNA gene	Chr15:97536430-97539009 (+)
DBA/2J	ENSMUSG00185042257	lncRNA gene	Chr15:97581361-97583923 (+)
FVB/NJ	ENSMUSG00205047375	lncRNA gene	Chr15:97285822-97288384 (+)
JF1/MsJ	ENSUMUG00000057605	lncRNA gene	Chr15:97039153-97041833 (+)
LP/J	ENSMUSG00230041385	lncRNA gene	Chr15:100925898-100928578 (+)
NOD/ShiLtJ	ENSMUSG00190049409	lncRNA gene	Chr15:97512357-97514940 (+)
NZO/HlLtJ	ENSMUSG00225043138	lncRNA gene	Chr15:101130464-101133047 (+)
PWK/PhJ	ENSLUMG00010050247	lncRNA gene	Chr15:97242356-97244918 (+)
SPRET/EiJ	ENSMSPG00010049910	lncRNA gene	Chr15:99065225-99067797 (+)
WSB/EiJ	ENSIUOG00005038721	lncRNA gene	Chr15:97667481-97670052 (+)

Homology

• Gene Tree
  Gm49492
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000116180 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116180	Ensembl Gene Model | MGI Sequence Detail	2563	C57BL/6J
transcript	ENSMUST00000229665	Ensembl | MGI Sequence Detail	2563	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm49492:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr133133	Chr15:100496848-100496896 (+)	-1,213 bp
Tssr133134	Chr15:100497603-100497628 (+)	-469 bp
Tssr133135	Chr15:100497631-100497648 (+)	-445 bp
Tssr133136	Chr15:100497653-100497674 (+)	-421 bp
Tssr133137	Chr15:100499858-100499862 (+)	1,775 bp