Gm49490 Gene Detail

Summary

• Symbol
  Gm49490
• Name
  predicted gene, 49490

• Feature Type
  lncRNA gene
• IDs
  MGI:6155166
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:78415017-78417443 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  205 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6155166	lncRNA gene	Chr15:78415017-78417443 (+)
129S1/SvImJ	ENSMUSG00200054077	lncRNA gene	Chr15:75523986-75525749 (+)
A/J	ENSMUSG00195052031	lncRNA gene	Chr15:75466310-75468073 (+)
AKR/J	ENSMUSG00220053107	lncRNA gene	Chr15:75509763-75511526 (+)
BALB/cJ	ENSMUSG00180053580	lncRNA gene	Chr15:75343353-75345116 (+)
C3H/HeJ	ENSMUSG00175053080	lncRNA gene	Chr15:75654681-75656444 (+)
C57BL/6NJ	ENSMUSG00215052702	lncRNA gene	Chr15:75424172-75425920 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005048064	lncRNA gene	Chr15:74970358-74972106 (+)
CBA/J	ENSMUSG00210049773	lncRNA gene	Chr15:75429890-75431653 (+)
DBA/2J	ENSMUSG00185051762	lncRNA gene	Chr15:75439685-75441448 (+)
FVB/NJ	ENSMUSG00205051807	lncRNA gene	Chr15:75159499-75161262 (+)
JF1/MsJ	ENSUMUG00000056864	lncRNA gene	Chr15:75018499-75020264 (+)
LP/J	ENSMUSG00230052640	lncRNA gene	Chr15:78772458-78774221 (+)
NOD/ShiLtJ	ENSMUSG00190053626	lncRNA gene	Chr15:75452656-75454421 (+)
NZO/HlLtJ	ENSMUSG00225053628	lncRNA gene	Chr15:79103577-79105325 (+)
PWK/PhJ	ENSLUMG00010052450	lncRNA gene	Chr15:75241169-75242934 (+)
SPRET/EiJ	ENSMSPG00010050746	lncRNA gene	Chr15:76901045-76902813 (+)
WSB/EiJ	ENSIUOG00005049634	lncRNA gene	Chr15:75505930-75507679 (+)

Homology

• Gene Tree
  Gm49490
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27

• Ensembl
  ENSMUSG00000116307 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116307	Ensembl Gene Model | MGI Sequence Detail	2427	C57BL/6J
transcript	ENSMUST00000247440	Ensembl | MGI Sequence Detail	2424	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm49490:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr131960	Chr15:78415287-78415316 (+)	285 bp