Gm49472 Gene Detail

Summary

• Symbol
  Gm49472
• Name
  predicted gene, 49472

• Feature Type
  lncRNA gene
• IDs
  MGI:6155138
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr15:87851617-87872718 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  855 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6155138	lncRNA gene	Chr15:87851617-87872718 (+)
129S1/SvImJ	ENSMUSG00200036286	lncRNA gene	Chr15:84994093-85015279 (+)
A/J	ENSMUSG00195020504	lncRNA gene	Chr15:84915672-84936867 (+)
AKR/J	ENSMUSG00220031307	lncRNA gene	Chr15:84953812-84974882 (+)
BALB/cJ	ENSMUSG00180015147	lncRNA gene	Chr15:84769693-84790815 (+)
C3H/HeJ	ENSMUSG00175028529	lncRNA gene	Chr15:85102466-85123644 (+)
C57BL/6NJ	ENSMUSG00215030328	lncRNA gene	Chr15:84872377-84893479 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005031093	lncRNA gene	Chr15:84370123-84391284 (+)
CBA/J	ENSMUSG00210013173	lncRNA gene	Chr15:84871954-84893135 (+)
DBA/2J	ENSMUSG00185022400	lncRNA gene	Chr15:84883857-84904975 (+)
FVB/NJ	ENSMUSG00205036784	lncRNA gene	Chr15:84639830-84660939 (+)
JF1/MsJ	ENSUMUG00000043301	lncRNA gene	Chr15:84436751-84460841 (+)
LP/J	ENSMUSG00230045431	lncRNA gene	Chr15:88234441-88255623 (+)
NOD/ShiLtJ	ENSMUSG00190030148	lncRNA gene	Chr15:84895452-84916573 (+)
NZO/HlLtJ	ENSMUSG00225051052	lncRNA gene	Chr15:88558451-88579578 (+)
PWK/PhJ	ENSLUMG00010036476	lncRNA gene	Chr15:84605933-84630038 (+)
SPRET/EiJ	ENSMSPG00010015002	lncRNA gene	Chr15:86304792-86325929 (+)
WSB/EiJ	ENSIUOG00005011504	lncRNA gene	Chr15:84963972-84985153 (+)

Homology

• Gene Tree
  Gm49472
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000116061 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116061	Ensembl Gene Model | MGI Sequence Detail	21102	C57BL/6J
transcript	ENSMUST00000229118	Ensembl | MGI Sequence Detail	757	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;