Gm49463 Gene Detail

Summary

• Symbol
  Gm49463
• Name
  predicted gene, 49463

• Feature Type
  lncRNA gene
• IDs
  MGI:6155122
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:83056521-83059014 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  160 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6155122	lncRNA gene	Chr15:83056521-83059014 (+)
129S1/SvImJ	ENSMUSG00200053852	lncRNA gene	Chr15:80182051-80184539 (+)
A/J	ENSMUSG00195052042	lncRNA gene	Chr15:80108302-80110790 (+)
AKR/J	ENSMUSG00220053266	lncRNA gene	Chr15:80151478-80153966 (+)
BALB/cJ	ENSMUSG00180054011	lncRNA gene	Chr15:79985226-79987714 (+)
C3H/HeJ	ENSMUSG00175053452	lncRNA gene	Chr15:80296148-80298636 (+)
C57BL/6NJ	ENSMUSG00215052909	lncRNA gene	Chr15:80074161-80076649 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005048314	lncRNA gene	Chr15:79570769-79573255 (+)
CBA/J	ENSMUSG00210049309	lncRNA gene	Chr15:80071156-80073644 (+)
DBA/2J	ENSMUSG00185051520	lncRNA gene	Chr15:80103859-80106347 (+)
FVB/NJ	ENSMUSG00205052595	lncRNA gene	Chr15:79844077-79846567 (+)
JF1/MsJ	ENSUMUG00000056702	lncRNA gene	Chr15:79635377-79638218 (+)
LP/J	ENSMUSG00230045774	lncRNA gene	Chr15:83422406-83424894 (+)
NOD/ShiLtJ	ENSMUSG00190053962	lncRNA gene	Chr15:80088300-80090788 (+)
NZO/HlLtJ	ENSMUSG00225050207	lncRNA gene	Chr15:83755524-83758012 (+)
PWK/PhJ	ENSLUMG00010052720	lncRNA gene	Chr15:79839060-79841895 (+)
SPRET/EiJ	ENSMSPG00010050941	lncRNA gene	Chr15:81501506-81504021 (+)
WSB/EiJ	ENSIUOG00005049958	lncRNA gene	Chr15:80170990-80173478 (+)

Homology

• Gene Tree
  Gm49463
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000116508 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116508	Ensembl Gene Model | MGI Sequence Detail	2494	C57BL/6J
transcript	ENSMUST00000231106	Ensembl | MGI Sequence Detail	2494	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm49463:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr132417	Chr15:83056511-83056607 (+)	38 bp