Gm49456 Pseudogene Detail

Summary

• Symbol
  Gm49456
• Name
  predicted gene, 49456

• Feature Type
  pseudogene
• IDs
  MGI:6155112
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:10056030-10056380 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  70 from dbSNP Build 142
• Strain Annotations
  32

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6155112	pseudogene	Chr16:10056030-10056380 (+)
129S1/SvImJ	ENSMUSG00200012116	pseudogene	Chr16:7056849-7057199 (+)
129S1/SvImJ	ENSMUSG00200045541	pseudogene	Chr14:45239264-45239613 (+)
A/J	ENSMUSG00195038879	pseudogene	Chr14:45454461-45454810 (+)
A/J	ENSMUSG00195011750	pseudogene	Chr16:6601161-6601511 (+)
AKR/J	ENSMUSG00220017659	pseudogene	Chr16:6889962-6890312 (+)
AKR/J	ENSMUSG00220037938	pseudogene	Chr14:44781257-44781606 (+)
BALB/cJ	ENSMUSG00180008568	pseudogene	Chr16:6840233-6840583 (+)
BALB/cJ	ENSMUSG00180053819	pseudogene	Chr14:45076507-45076856 (+)
C3H/HeJ	ENSMUSG00175030300	pseudogene	Chr16:7031248-7031598 (+)
C3H/HeJ	ENSMUSG00175052834	pseudogene	Chr14:46765271-46765620 (+)
C57BL/6NJ	ENSMUSG00215024533	pseudogene	Chr16:6705424-6705774 (+)
C57BL/6NJ	ENSMUSG00215051224	pseudogene	Chr14:44973372-44973721 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005031837	pseudogene	Chr16:6950550-6950900 (+)
CBA/J	ENSMUSG00210012153	pseudogene	Chr16:7048468-7048818 (+)
CBA/J	ENSMUSG00210049717	pseudogene	Chr14:45444959-45445308 (+)
DBA/2J	ENSMUSG00185010099	pseudogene	Chr16:6993752-6994102 (+)
DBA/2J	ENSMUSG00185056390	pseudogene	Chr14:50561312-50561661 (+)
FVB/NJ	ENSMUSG00205048663	pseudogene	Chr14:44848550-44848899 (+)
FVB/NJ	ENSMUSG00205013009	pseudogene	Chr16:6910508-6910858 (+)
JF1/MsJ	ENSUMUG00000040471	pseudogene	Chr16:7098424-7098774 (+)
LP/J	ENSMUSG00230053592	pseudogene	Chr14:62608351-62608700 (+)
LP/J	ENSMUSG00230012847	pseudogene	Chr16:9552625-9552975 (+)
NOD/ShiLtJ	ENSMUSG00190026158	pseudogene	Chr16:7092491-7092841 (+)
NOD/ShiLtJ	ENSMUSG00190052159	pseudogene	Chr14:45211293-45211642 (+)
NZO/HlLtJ	ENSMUSG00225032555	pseudogene	Chr16:12776817-12777167 (+)
NZO/HlLtJ	ENSMUSG00225047533	pseudogene	Chr14:52898701-52899050 (+)
PWK/PhJ	ENSLUMG00010052512	pseudogene	Chr14:44668448-44668798 (+)
PWK/PhJ	ENSLUMG00010018023	pseudogene	Chr16:6933209-6933559 (+)
SPRET/EiJ	ENSMSPG00010017895	pseudogene	Chr16:6923669-6924018 (+)
WSB/EiJ	ENSIUOG00005048486	pseudogene	Chr14:44628575-44628924 (+)
WSB/EiJ	ENSIUOG00005016553	pseudogene	Chr16:7041856-7042206 (+)

Homology

• Gene Tree
  Gm49456
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34

• Ensembl
  ENSMUSG00000116187 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116187	Ensembl Gene Model | MGI Sequence Detail	351	C57BL/6J
transcript	ENSMUST00000229819	Ensembl | MGI Sequence Detail	351	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;