Gm49455 Gene Detail

Summary

• Symbol
  Gm49455
• Name
  predicted gene, 49455

• Feature Type
  lncRNA gene
• IDs
  MGI:6155110
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:10004157-10045388 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  855 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6155110	lncRNA gene	Chr16:10004157-10045388 (-)
129S1/SvImJ	ENSMUSG00200012333	lncRNA gene	Chr16:6995331-7046203 (-)
A/J	ENSMUSG00195012051	lncRNA gene	Chr16:6549267-6590519 (-)
AKR/J	ENSMUSG00220017712	lncRNA gene	Chr16:6838070-6879321 (-)
BALB/cJ	ENSMUSG00180008915	lncRNA gene	Chr16:6788355-6829591 (-)
C3H/HeJ	ENSMUSG00175030093	lncRNA gene	Chr16:6979374-7020607 (-)
C57BL/6NJ	ENSMUSG00215025791	lncRNA gene	Chr16:6653547-6694779 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032168	lncRNA gene	Chr16:6898943-6939960 (-)
CBA/J	ENSMUSG00210012242	lncRNA gene	Chr16:6996589-7037825 (-)
DBA/2J	ENSMUSG00185010268	lncRNA gene	Chr16:6941875-6983110 (-)
FVB/NJ	ENSMUSG00205013529	lncRNA gene	Chr16:6858633-6899866 (-)
JF1/MsJ	ENSUMUG00000037755	lncRNA gene	Chr16:7051583-7088245 (-)
LP/J	ENSMUSG00230012319	lncRNA gene	Chr16:9493862-9541982 (-)
NOD/ShiLtJ	ENSMUSG00190028126	lncRNA gene	Chr16:7040617-7081849 (-)
NZO/HlLtJ	ENSMUSG00225032483	lncRNA gene	Chr16:12724938-12766174 (-)
PWK/PhJ	ENSLUMG00010017792	lncRNA gene	Chr16:6880784-6923047 (-)
SPRET/EiJ	ENSMSPG00010018449	lncRNA gene	Chr16:6871524-6903638 (-)
WSB/EiJ	ENSIUOG00005016647	lncRNA gene	Chr16:6989848-7031216 (-)

Homology

• Gene Tree
  Gm49455
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  3
• Gene trapped
  3
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000115943 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115943	Ensembl Gene Model | MGI Sequence Detail	41232	C57BL/6J
transcript	ENSMUST00000230210	Ensembl | MGI Sequence Detail	671	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;