Gm49454 Gene Detail

Summary

• Symbol
  Gm49454
• Name
  predicted gene, 49454

• Feature Type
  lncRNA gene
• IDs
  MGI:6155108
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:67121193-67254362 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  3555 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6155108	lncRNA gene	Chr10:67121193-67254362 (+)
129S1/SvImJ	ENSMUSG00200017840	lncRNA gene	Chr10:63829574-63950873 (+)
A/J	ENSMUSG00195005768	lncRNA gene	Chr10:64123804-64245129 (+)
AKR/J	ENSMUSG00220029147	lncRNA gene	Chr10:63792636-63913935 (+)
BALB/cJ	ENSMUSG00180007822	lncRNA gene	Chr10:64158353-64279669 (+)
C3H/HeJ	ENSMUSG00175013343	lncRNA gene	Chr10:63992880-64114184 (+)
C57BL/6NJ	ENSMUSG00215003994	lncRNA gene	Chr10:63767886-63889211 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005027584	lncRNA gene	Chr10:63726607-63851087 (+)
CBA/J	ENSMUSG00210010014	lncRNA gene	Chr10:63872731-63994039 (+)
DBA/2J	ENSMUSG00185020410	lncRNA gene	Chr10:64235558-64356862 (+)
FVB/NJ	ENSMUSG00205007609	lncRNA gene	Chr10:63939321-64061108 (+)
JF1/MsJ	ENSUMUG00000023194	lncRNA gene	Chr10:65432855-65555638 (+)
LP/J	ENSMUSG00230020335	lncRNA gene	Chr10:66001859-66123665 (+)
NOD/ShiLtJ	ENSMUSG00190008260	lncRNA gene	Chr10:64233705-64355468 (+)
NZO/HlLtJ	ENSMUSG00225045357	lncRNA gene	Chr10:70290258-70411555 (+)
PWK/PhJ	ENSLUMG00010008222	lncRNA gene	Chr10:63831023-63953022 (+)
SPRET/EiJ	ENSMSPG00010023706	lncRNA gene	Chr10:65485696-65606826 (+)
WSB/EiJ	ENSIUOG00005033759	lncRNA gene	Chr10:63759749-63880985 (+)

Homology

• Gene Tree
  Gm49454
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33

• Ensembl
  ENSMUSG00000112314 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112314	Ensembl Gene Model | MGI Sequence Detail	133170	C57BL/6J
transcript	ENSMUST00000367119	Ensembl | MGI Sequence Detail	805	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;