Gm49448 Gene Detail

Summary

• Symbol
  Gm49448
• Name
  predicted gene, 49448

• Feature Type
  lncRNA gene
• IDs
  MGI:6155097
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr16:8897260-9038550 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  3976 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6155097	lncRNA gene	Chr16:8897260-9038550 (+)
129S1/SvImJ	ENSMUSG00200012178	lncRNA gene	Chr16:5874918-5937921 (+)
A/J	ENSMUSG00195011989	lncRNA gene	Chr16:5439021-5497168 (+)
AKR/J	ENSMUSG00220017328	lncRNA gene	Chr16:5727785-5785934 (+)
BALB/cJ	ENSMUSG00180009047	lncRNA gene	Chr16:5680717-5739088 (+)
C3H/HeJ	ENSMUSG00175031254	lncRNA gene	Chr16:5871811-5930171 (+)
C57BL/6NJ	ENSMUSG00215026126	lncRNA gene	Chr16:5545897-5604262 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005031700	lncRNA gene	Chr16:5771065-5835939 (+)
CBA/J	ENSMUSG00210012130	lncRNA gene	Chr16:5889033-5947406 (+)
DBA/2J	ENSMUSG00185010202	lncRNA gene	Chr16:5834293-5892653 (+)
FVB/NJ	ENSMUSG00205013636	lncRNA gene	Chr16:5752638-5810996 (+)
JF1/MsJ	ENSUMUG00000038956	lncRNA gene	Chr16:5912260-5978201 (+)
LP/J	ENSMUSG00230012889	lncRNA gene	Chr16:8373534-8436536 (+)
NOD/ShiLtJ	ENSMUSG00190025756	lncRNA gene	Chr16:5925530-5983894 (+)
NZO/HlLtJ	ENSMUSG00225032490	lncRNA gene	Chr16:11617403-11675769 (+)
PWK/PhJ	ENSLUMG00010018340	lncRNA gene	Chr16:5745356-5809704 (+)
SPRET/EiJ	ENSMSPG00010017647	lncRNA gene	Chr16:5727495-5794616 (+)
WSB/EiJ	ENSIUOG00005016837	lncRNA gene	Chr16:5863154-5921318 (+)

Homology

• Gene Tree
  Gm49448
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  44

• Ensembl
  ENSMUSG00000116469 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116469	Ensembl Gene Model | MGI Sequence Detail	141291	C57BL/6J
transcript	ENSMUST00000346227	Ensembl | MGI Sequence Detail	1769	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm49448:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr137017	Chr16:8951039-8951055 (+)	53,787 bp
Tssr137018	Chr16:8951129-8951141 (+)	53,875 bp
Tssr137019	Chr16:8951159-8951174 (+)	53,907 bp