Gm49443 Pseudogene Detail

Summary

• Symbol
  Gm49443
• Name
  predicted gene, 49443

• Feature Type
  pseudogene
• IDs
  MGI:6155090
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr15:98281888-98282148 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  137 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6155090	pseudogene	Chr15:98281888-98282148 (+)
129S1/SvImJ	ENSMUSG00200052104	pseudogene	Chr15:95469505-95469765 (+)
A/J	ENSMUSG00195047868	pseudogene	Chr15:95346096-95346356 (+)
AKR/J	ENSMUSG00220049561	pseudogene	Chr15:95351938-95352198 (+)
BALB/cJ	ENSMUSG00180048047	pseudogene	Chr15:95257029-95257289 (+)
C3H/HeJ	ENSMUSG00175046546	pseudogene	Chr15:95526290-95526550 (+)
C57BL/6NJ	ENSMUSG00215051946	pseudogene	Chr15:95319919-95320179 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005047554	pseudogene	Chr15:94795476-94795736 (+)
CBA/J	ENSMUSG00210031614	pseudogene	Chr15:95311526-95311786 (+)
DBA/2J	ENSMUSG00185043970	pseudogene	Chr15:95351805-95352065 (+)
FVB/NJ	ENSMUSG00205046373	pseudogene	Chr15:95055091-95055351 (+)
JF1/MsJ	ENSUMUG00000057107	pseudogene	Chr15:94814729-94814989 (+)
LP/J	ENSMUSG00230040613	pseudogene	Chr15:98682161-98682421 (+)
NOD/ShiLtJ	ENSMUSG00190051366	pseudogene	Chr15:95335034-95335294 (+)
NZO/HlLtJ	ENSMUSG00225043767	pseudogene	Chr15:98956952-98957212 (+)
PWK/PhJ	ENSLUMG00010050508	pseudogene	Chr15:95027843-95028103 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005038863	pseudogene	Chr15:95448809-95449069 (+)

Homology

• Gene Tree
  Gm49443
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000116514 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116514	Ensembl Gene Model | MGI Sequence Detail	261	C57BL/6J
transcript	ENSMUST00000230662	Ensembl | MGI Sequence Detail	261	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;