Gm49436 Gene Detail

Summary

• Symbol
  Gm49436
• Name
  predicted gene, 49436

• Feature Type
  lncRNA gene
• IDs
  MGI:6155077
  NCBI Gene: 118568207
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:77250098-77250899 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  129 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6155077	lncRNA gene	Chr15:77245471-77252646 (-)
129S1/SvImJ	ENSMUSG00200054105	unclassified gene	Chr15:74364393-74365196 (-)
A/J	ENSMUSG00195052244	unclassified gene	Chr15:74323363-74324150 (-)
AKR/J	ENSMUSG00220053071	unclassified gene	Chr15:74350181-74350982 (-)
BALB/cJ	ENSMUSG00180053520	unclassified gene	Chr15:74148518-74149305 (-)
C3H/HeJ	ENSMUSG00175052934	unclassified gene	Chr15:74511891-74512678 (-)
C57BL/6NJ	ENSMUSG00215053253	unclassified gene	Chr15:74256277-74257080 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005047536	unclassified gene	Chr15:73866202-73866996 (-)
CBA/J	ENSMUSG00210050011	unclassified gene	Chr15:74287084-74287871 (-)
DBA/2J	ENSMUSG00185051094	unclassified gene	Chr15:74279739-74280542 (-)
FVB/NJ	ENSMUSG00205051013	unclassified gene	Chr15:74016629-74017416 (-)
JF1/MsJ	ENSUMUG00000055854	unclassified gene	Chr15:73934163-73934998 (-)
LP/J	ENSMUSG00230052807	unclassified gene	Chr15:77629747-77630534 (-)
NOD/ShiLtJ	ENSMUSG00190053359	unclassified gene	Chr15:74273749-74274534 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010052939	unclassified gene	Chr15:74210376-74211249 (-)
SPRET/EiJ	ENSMSPG00010051205	unclassified gene	Chr15:75847361-75848180 (-)
WSB/EiJ	ENSIUOG00005049987	unclassified gene	Chr15:74339033-74339836 (-)

Homology

• Gene Tree
  Gm49436
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000116413 (Evidence)
• NCBI Gene
  118568207

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116413	Ensembl Gene Model | MGI Sequence Detail	802	C57BL/6J
transcript	XR_004939000	RefSeq | MGI Sequence Detail	2611	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm49436:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr135097	Chr15:77251340-77251350 (-)	-446 bp