Gm49428 Gene Detail

Summary

• Symbol
  Gm49428
• Name
  predicted gene, 49428

• Feature Type
  lncRNA gene
• IDs
  MGI:6155065
  NCBI Gene: 115488474
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:101598976-101600492 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  141 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6155065	lncRNA gene	Chr15:101598741-101618464 (+)
129S1/SvImJ	ENSMUSG00200052563	lncRNA gene	Chr15:98817525-98819157 (+)
A/J	ENSMUSG00195046223	lncRNA gene	Chr15:98693958-98695590 (+)
AKR/J	ENSMUSG00220050358	lncRNA gene	Chr15:98684090-98685722 (+)
BALB/cJ	ENSMUSG00180048959	lncRNA gene	Chr15:98587521-98589153 (+)
C3H/HeJ	ENSMUSG00175049277	lncRNA gene	Chr15:98873950-98875582 (+)
C57BL/6NJ	ENSMUSG00215051646	lncRNA gene	Chr15:98639590-98641222 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005047656	lncRNA gene	Chr15:98115121-98116752 (+)
CBA/J	ENSMUSG00210032643	lncRNA gene	Chr15:98647122-98648754 (+)
DBA/2J	ENSMUSG00185042790	lncRNA gene	Chr15:98684069-98685701 (+)
FVB/NJ	ENSMUSG00205047413	lncRNA gene	Chr15:98388552-98390184 (+)
JF1/MsJ	ENSUMUG00000057413	lncRNA gene	Chr15:98143270-98144901 (+)
LP/J	ENSMUSG00230040318	lncRNA gene	Chr15:102041158-102042790 (+)
NOD/ShiLtJ	ENSMUSG00190051233	lncRNA gene	Chr15:98623360-98624992 (+)
NZO/HlLtJ	ENSMUSG00225028202	lncRNA gene	Chr15:102225249-102226881 (+)
PWK/PhJ	ENSLUMG00010049699	lncRNA gene	Chr15:98356024-98357656 (+)
SPRET/EiJ	ENSMSPG00010050626	lncRNA gene	Chr15:100151365-100152979 (+)
WSB/EiJ	ENSIUOG00005039031	lncRNA gene	Chr15:98776194-98777826 (+)

Homology

• Gene Tree
  Gm49428
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2

• Ensembl
  ENSMUSG00000116132 (Evidence)
• NCBI Gene
  115488474

Representative Sequences			Length	Strain/Species
genomic	115488474	NCBI Gene Model | MGI Sequence Detail	1517	C57BL/6J
transcript	XR_003951487	RefSeq | MGI Sequence Detail	1074	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm49428:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr133304	Chr15:101598898-101598917 (+)	-68 bp