Gm49404 Pseudogene Detail

Summary

• Symbol
  Gm49404
• Name
  predicted gene, 49404

• Feature Type
  pseudogene
• IDs
  MGI:6155028
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:31162965-31163323 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  108 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6155028	pseudogene	Chr16:31162965-31163323 (+)
129S1/SvImJ	ENSMUSG00200036249	pseudogene	Chr16:28180093-28180451 (+)
A/J	ENSMUSG00195030105	pseudogene	Chr16:27726731-27727089 (+)
AKR/J	ENSMUSG00220032433	pseudogene	Chr16:28028129-28028487 (+)
BALB/cJ	ENSMUSG00180032130	pseudogene	Chr16:27947774-27948132 (+)
C3H/HeJ	ENSMUSG00175037882	pseudogene	Chr16:28098478-28098836 (+)
C57BL/6NJ	ENSMUSG00215027804	pseudogene	Chr16:27967961-27968319 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005037649	pseudogene	Chr16:28367710-28368068 (+)
CBA/J	ENSMUSG00210040274	pseudogene	Chr16:28140493-28140851 (+)
DBA/2J	ENSMUSG00185019853	pseudogene	Chr16:28055953-28056311 (+)
FVB/NJ	ENSMUSG00205023443	pseudogene	Chr16:28063413-28063771 (+)
JF1/MsJ	ENSUMUG00000043737	pseudogene	Chr16:28212399-28212765 (+)
LP/J	ENSMUSG00230033138	pseudogene	Chr16:30624741-30625099 (+)
NOD/ShiLtJ	ENSMUSG00190034081	pseudogene	Chr16:28241938-28242296 (+)
NZO/HlLtJ	ENSMUSG00225039697	pseudogene	Chr16:33859920-33860278 (+)
PWK/PhJ	ENSLUMG00010035983	pseudogene	Chr16:28046718-28047084 (+)
SPRET/EiJ	ENSMSPG00010018837	pseudogene	Chr16:28022680-28023047 (+)
WSB/EiJ	ENSIUOG00005036289	pseudogene	Chr16:28220643-28221001 (+)

Homology

• Gene Tree
  Gm49404
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000115997 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115997	Ensembl Gene Model | MGI Sequence Detail	359	C57BL/6J
transcript	ENSMUST00000229414	Ensembl | MGI Sequence Detail	359	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;