Gm49386 Pseudogene Detail

Summary

• Symbol
  Gm49386
• Name
  predicted gene, 49386

• Feature Type
  pseudogene
• IDs
  MGI:6121611
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:23684351-23684476 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  13 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6121611	pseudogene	Chr12:23684351-23684476 (-)
129S1/SvImJ	ENSMUSG00200023424	pseudogene	Chr12:16033320-16033406 (-)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	ENSMUSG00180010613	pseudogene	Chr12:16987663-16987788 (-)
BALB/cJ	ENSMUSG00180010618	pseudogene	Chr12:17168462-17168632 (-)
BALB/cJ	ENSMUSG00180010624	pseudogene	Chr12:17544583-17544708 (-)
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215006012	pseudogene	Chr12:15646515-15646640 (-)
C57BL/6NJ	ENSMUSG00215006026	pseudogene	Chr12:17145838-17145963 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005005825	pseudogene	Chr12:14701097-14701222 (+)
CAST/EiJ	ENSTCUG00005005827	pseudogene	Chr12:15964081-15964206 (-)
CAST/EiJ	ENSTCUG00005005830	pseudogene	Chr12:17532238-17532408 (-)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	ENSMUSG00205002170	pseudogene	Chr12:17037476-17037602 (-)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230007393	pseudogene	Chr12:23125150-23125275 (+)
LP/J	ENSMUSG00230008185	pseudogene	Chr12:20242927-20243052 (-)
NOD/ShiLtJ	ENSMUSG00190008402	pseudogene	Chr12:892321-892456 (-)
NZO/HlLtJ	ENSMUSG00225035574	pseudogene	Chr12:22445113-22445238 (-)
NZO/HlLtJ	ENSMUSG00225034446	pseudogene	Chr12:25075541-25075666 (+)
PWK/PhJ	ENSLUMG00010004598	pseudogene	Chr12:17423157-17423282 (-)
SPRET/EiJ	ENSMSPG00010003161	pseudogene	Chr12:17792908-17793033 (-)
WSB/EiJ	ENSIUOG00005001702	pseudogene	Chr12:15578850-15578975 (-)

Homology

• Gene Tree
  Gm49386
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000112997 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112997	Ensembl Gene Model | MGI Sequence Detail	126	C57BL/6J
transcript	ENSMUST00000220467	Ensembl | MGI Sequence Detail	126	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;