Gm49376 Pseudogene Detail

Summary

• Symbol
  Gm49376
• Name
  predicted gene, 49376

• Feature Type
  pseudogene
• IDs
  MGI:6121596
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:55322166-55325499 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  119 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6121596	pseudogene	Chr12:55322166-55325499 (+)
129S1/SvImJ	ENSMUSG00200031238	pseudogene	Chr12:47230731-47234064 (+)
A/J	ENSMUSG00195019448	pseudogene	Chr12:49796196-49799531 (+)
AKR/J	ENSMUSG00220028039	pseudogene	Chr12:47814554-47817889 (+)
BALB/cJ	ENSMUSG00180006145	pseudogene	Chr12:48817157-48820482 (+)
C3H/HeJ	ENSMUSG00175017181	pseudogene	Chr12:51858262-51861595 (+)
C57BL/6NJ	ENSMUSG00215017318	pseudogene	Chr12:48164988-48168319 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009168	pseudogene	Chr12:48236576-48240056 (+)
CBA/J	ENSMUSG00210009972	pseudogene	Chr12:48332562-48335893 (+)
DBA/2J	ENSMUSG00185001185	pseudogene	Chr12:50277981-50281316 (+)
FVB/NJ	ENSMUSG00205014273	pseudogene	Chr12:48119189-48122524 (+)
JF1/MsJ	ENSUMUG00000010851	pseudogene	Chr12:54371517-54374987 (+)
LP/J	ENSMUSG00230016424	pseudogene	Chr12:57307716-57311049 (+)
NOD/ShiLtJ	ENSMUSG00190017171	pseudogene	Chr12:47326377-47329714 (+)
NZO/HlLtJ	ENSMUSG00225041097	pseudogene	Chr12:59451627-59454960 (+)
PWK/PhJ	ENSLUMG00010016679	pseudogene	Chr12:48408895-48412387 (+)
SPRET/EiJ	ENSMSPG00010016611	pseudogene	Chr12:49801330-49804760 (+)
SPRET/EiJ	ENSMSPG00010016744	pseudogene	Chr12:49831793-49835223 (+)
WSB/EiJ	ENSIUOG00005003738	pseudogene	Chr12:48165535-48168878 (+)

Homology

• Gene Tree
  Gm49376
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000112368 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112368	Ensembl Gene Model | MGI Sequence Detail	3334	C57BL/6J
transcript	ENSMUST00000217756	Ensembl | MGI Sequence Detail	367	Not Applicable

References

• Summaries
  All 3

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14