Gm49372 Pseudogene Detail

Summary

• Symbol
  Gm49372
• Name
  predicted gene, 49372

• Feature Type
  pseudogene
• IDs
  MGI:6121590
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:19604080-19606137 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  37 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6121590	pseudogene	Chr12:19604080-19606137 (+)
129S1/SvImJ	ENSMUSG00200024499	pseudogene	Chr12:15353982-15355897 (+)
A/J	ENSMUSG00195021889	pseudogene	Chr12:17398459-17400516 (-)
AKR/J	ENSMUSG00220030268	pseudogene	Chr12:16773675-16775732 (+)
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006333	pseudogene	Chr12:15555288-15557205 (-)
CAST/EiJ	ENSTCUG00005006338	pseudogene	Chr12:15913260-15915175 (-)
CBA/J	ENSMUSG00210008025	pseudogene	Chr12:16507106-16509020 (+)
DBA/2J	ENSMUSG00185003791	pseudogene	Chr12:16769529-16771607 (-)
FVB/NJ	ENSMUSG00205001763	pseudogene	Chr12:16011381-16013281 (-)
FVB/NJ	ENSMUSG00205001764	pseudogene	Chr12:16983553-16985798 (-)
FVB/NJ	ENSMUSG00205001765	pseudogene	Chr12:14896707-14896708 (+)
JF1/MsJ	ENSUMUG00000009046	pseudogene	Chr12:16504997-16507054 (+)
LP/J	ENSMUSG00230007141	pseudogene	Chr12:21055709-21057766 (-)
LP/J	ENSMUSG00230008115	pseudogene	Chr12:26003198-26005255 (-)
NOD/ShiLtJ	ENSMUSG00190008038	pseudogene	Chr12:815719-817647 (-)
NZO/HlLtJ	ENSMUSG00225035445	pseudogene	Chr12:28186280-28188337 (-)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010003320	pseudogene	Chr12:17867126-17873302 (-)
WSB/EiJ	ENSIUOG00005001841	pseudogene	Chr12:16816776-16819029 (+)
WSB/EiJ	ENSIUOG00005001839	pseudogene	Chr12:15656607-15656701 (-)

Homology

• Gene Tree
  Gm49372
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000114158 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114158	Ensembl Gene Model | MGI Sequence Detail	2058	C57BL/6J
transcript	ENSMUST00000221242	Ensembl | MGI Sequence Detail	470	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;