Gm49370 Pseudogene Detail

Summary

• Symbol
  Gm49370
• Name
  predicted gene, 49370

• Feature Type
  pseudogene
• IDs
  MGI:6121587
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:18903872-18904006 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  12 from dbSNP Build 142
• Strain Annotations
  32

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6121587	pseudogene	Chr12:18903872-18904006 (+)
129S1/SvImJ	ENSMUSG00200024094	pseudogene	Chr12:16165205-16165339 (-)
A/J	ENSMUSG00195021632	pseudogene	Chr12:17346509-17346643 (-)
A/J	ENSMUSG00195022163	pseudogene	Chr12:16468823-16468957 (+)
AKR/J	ENSMUSG00220030031	pseudogene	Chr12:16841032-16841166 (-)
AKR/J	ENSMUSG00220029974	pseudogene	Chr12:15956319-15956442 (-)
AKR/J	ENSMUSG00220030001	pseudogene	Chr12:16580464-16580598 (-)
BALB/cJ	ENSMUSG00180010463	pseudogene	Chr12:15627918-15628052 (+)
C3H/HeJ	ENSMUSG00175021937	pseudogene	Chr12:20890670-20890804 (-)
C57BL/6NJ	ENSMUSG00215005662	pseudogene	Chr12:15862164-15862298 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006182	pseudogene	Chr12:15607759-15607893 (-)
CBA/J	ENSMUSG00210008621	pseudogene	Chr12:16010216-16010350 (+)
DBA/2J	ENSMUSG00185004345	pseudogene	Chr12:18918926-18919060 (-)
FVB/NJ	ENSMUSG00205002065	pseudogene	Chr12:17037468-17037603 (-)
JF1/MsJ	ENSUMUG00000008370	pseudogene	Chr12:15804332-15804466 (+)
LP/J	ENSMUSG00230023212	pseudogene	Chr12:19249303-19249437 (-)
LP/J	ENSMUSG00230023204	pseudogene	Chr12:18560053-18560187 (+)
LP/J	ENSMUSG00230021898	pseudogene	Chr12:17710758-17710892 (+)
LP/J	ENSMUSG00230007817	pseudogene	Chr12:21226246-21226380 (-)
LP/J	ENSMUSG00230008170	pseudogene	Chr12:26373816-26373950 (-)
NOD/ShiLtJ	ENSMUSG00190008102	pseudogene	Chr12:1131511-1131645 (-)
NOD/ShiLtJ	ENSMUSG00190013634	pseudogene	Chr12:16340608-16340742 (-)
NOD/ShiLtJ	ENSMUSG00190008096	pseudogene	Chr12:772025-772160 (-)
NOD/ShiLtJ	ENSMUSG00190008101	pseudogene	Chr12:898109-898243 (-)
NZO/HlLtJ	ENSMUSG00225035491	pseudogene	Chr12:28556919-28557053 (-)
NZO/HlLtJ	ENSMUSG00225035441	pseudogene	Chr12:28140717-28140849 (-)
NZO/HlLtJ	ENSMUSG00225035237	pseudogene	Chr12:23428791-23428925 (-)
NZO/HlLtJ	ENSMUSG00225030306	pseudogene	Chr12:19815352-19815486 (+)
NZO/HlLtJ	ENSMUSG00225030402	pseudogene	Chr12:20664597-20664731 (+)
NZO/HlLtJ	ENSMUSG00225035102	pseudogene	Chr12:21353381-21353515 (-)
PWK/PhJ	ENSLUMG00010004400	pseudogene	Chr12:17423149-17423283 (-)
PWK/PhJ	ENSLUMG00010005253	pseudogene	Chr12:16040826-16040960 (+)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm49370
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34

• Ensembl
  ENSMUSG00000112970 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112970	Ensembl Gene Model | MGI Sequence Detail	135	C57BL/6J
transcript	ENSMUST00000220531	Ensembl | MGI Sequence Detail	135	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;