Gm49368 Gene Detail

Summary

• Symbol
  Gm49368
• Name
  predicted gene, 49368

• Feature Type
  protein coding gene
• IDs
  MGI:6121583
  NCBI Gene: 118261720
• Alliance
  gene page
• Transcription Start Sites
  42 TSS

Location &
Maps

• Sequence Map
  Chr7:127661855-127727332 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  356 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6121583	protein coding gene	Chr7:127661855-127727332 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0033071	protein coding gene	Chr7:132464562-132532886 (+)
A/J	MGP_AJ_G0033054	protein coding gene	Chr7:128908552-128969713 (+)
AKR/J	MGP_AKRJ_G0032986	protein coding gene	Chr7:132260923-132330448 (+)
BALB/cJ	MGP_BALBcJ_G0033055	protein coding gene	Chr7:128567499-128633501 (+)
C3H/HeJ	MGP_C3HHeJ_G0032769	protein coding gene	Chr7:132153511-132222701 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0033565	protein coding gene	Chr7:137621388-137693833 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0030537	protein coding gene	Chr7:130090793-130153580 (+)
CAST/EiJ	MGP_CASTEiJ_G0032098	protein coding gene	Chr7:123945895-124011309 (+)
CBA/J	MGP_CBAJ_G0032742	protein coding gene	Chr7:142304627-142389198 (+)
DBA/2J	MGP_DBA2J_G0032894	protein coding gene	Chr7:126891549-126953321 (+)
FVB/NJ	MGP_FVBNJ_G0032847	protein coding gene	Chr7:126749333-126820025 (+)
LP/J	MGP_LPJ_G0032988	protein coding gene	Chr7:133934857-134005405 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0032879	protein coding gene	Chr7:143369110-143440742 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0033584	protein coding gene	Chr7:131238752-131305414 (+)
PWK/PhJ	MGP_PWKPhJ_G0031805	protein coding gene	Chr7:119895271-119959405 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0031651	protein coding gene	Chr7:118047978-118104935 (+)
WSB/EiJ	MGP_WSBEiJ_G0032210	protein coding gene	Chr7:132206867-132277757 (+)

Homology

• Gene Tree
  Gm49368
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• UniProt
  1

• Ensembl
  ENSMUSG00000108596 (Evidence)
• NCBI Gene
  118261720

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108596	Ensembl Gene Model | MGI Sequence Detail	65478	C57BL/6J
transcript	ENSMUST00000098015	Ensembl | MGI Sequence Detail	4803	Not Applicable
polypeptide	ENSMUSP00000095625	Ensembl | MGI Sequence Detail	1232	Not Applicable

Protein
Information

• UniProt
  1 Sequence

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:193309 Mouse Genome Informatics Scientfic Curators, Curated associations of genes in MGI and UniProt sequence records. 2013;

TSS for Gm49368:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr69336	Chr7:127661829-127661859 (+)	-11 bp
Tssr69337	Chr7:127661866-127661869 (+)	13 bp
Tssr69338	Chr7:127661870-127661902 (+)	31 bp
Tssr69339	Chr7:127662898-127662912 (+)	1,050 bp
Tssr69340	Chr7:127663953-127663971 (+)	2,107 bp
Tssr69341	Chr7:127667276-127667310 (+)	5,438 bp
Tssr69342	Chr7:127667764-127667805 (+)	5,930 bp
Tssr69343	Chr7:127669328-127669332 (+)	7,475 bp
Tssr69344	Chr7:127669790-127669803 (+)	7,942 bp
Tssr69345	Chr7:127669828-127669851 (+)	7,985 bp
Tssr69346	Chr7:127670082-127670098 (+)	8,235 bp
Tssr69347	Chr7:127675331-127675354 (+)	13,488 bp
Tssr69348	Chr7:127675360-127675372 (+)	13,511 bp
Tssr69349	Chr7:127676944-127676947 (+)	15,091 bp
Tssr69350	Chr7:127676990-127676998 (+)	15,139 bp
Tssr69351	Chr7:127680805-127680818 (+)	18,957 bp
Tssr69352	Chr7:127681800-127681819 (+)	19,955 bp
Tssr69353	Chr7:127682845-127682859 (+)	20,997 bp
Tssr69354	Chr7:127683071-127683085 (+)	21,223 bp
Tssr69355	Chr7:127706854-127706867 (+)	45,006 bp
Tssr69356	Chr7:127712140-127712161 (+)	50,296 bp
Tssr69357	Chr7:127712375-127712387 (+)	50,526 bp
Tssr69358	Chr7:127712419-127712440 (+)	50,575 bp
Tssr69359	Chr7:127715212-127715234 (+)	53,368 bp
Tssr69360	Chr7:127715453-127715461 (+)	53,602 bp
Tssr69361	Chr7:127715971-127715996 (+)	54,129 bp
Tssr69362	Chr7:127716484-127716495 (+)	54,635 bp
Tssr69363	Chr7:127716514-127716566 (+)	54,685 bp
Tssr69364	Chr7:127716568-127716611 (+)	54,735 bp
Tssr69365	Chr7:127716612-127716646 (+)	54,774 bp
Tssr69366	Chr7:127716920-127716931 (+)	55,071 bp
Tssr69367	Chr7:127716959-127716970 (+)	55,110 bp
Tssr69368	Chr7:127716990-127716993 (+)	55,137 bp
Tssr69369	Chr7:127717000-127717020 (+)	55,155 bp
Tssr69370	Chr7:127717025-127717036 (+)	55,176 bp
Tssr69371	Chr7:127717081-127717088 (+)	55,230 bp
Tssr69372	Chr7:127717159-127717168 (+)	55,309 bp
Tssr69373	Chr7:127717189-127717217 (+)	55,348 bp
Tssr69374	Chr7:127717238-127717259 (+)	55,394 bp
Tssr69375	Chr7:127717308-127717322 (+)	55,460 bp
Tssr69376	Chr7:127717334-127717347 (+)	55,486 bp
Tssr69377	Chr7:127717356-127717382 (+)	55,514 bp