Gm49334 Gene Detail

Summary

• Symbol
  Gm49334
• Name
  predicted gene, 49334

• Feature Type
  lncRNA gene
• IDs
  MGI:6121520
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr9:60434476-60540744 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  3153 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6121520	lncRNA gene	Chr9:60434476-60540744 (+)
129S1/SvImJ	ENSMUSG00200036308	lncRNA gene	Chr9:57546620-57566327 (+)
A/J	ENSMUSG00195041182	lncRNA gene	Chr9:57254199-57273906 (+)
AKR/J	ENSMUSG00220031507	lncRNA gene	Chr9:57403371-57423077 (+)
BALB/cJ	ENSMUSG00180019442	lncRNA gene	Chr9:57381806-57401514 (+)
C3H/HeJ	ENSMUSG00175022230	lncRNA gene	Chr9:57380847-57400556 (+)
C57BL/6NJ	ENSMUSG00215035477	lncRNA gene	Chr9:57368967-57388675 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005022354	lncRNA gene	Chr9:57303887-57322325 (+)
CBA/J	ENSMUSG00210044031	lncRNA gene	Chr9:57495616-57514007 (+)
DBA/2J	ENSMUSG00185044519	lncRNA gene	Chr9:57508072-57527778 (+)
FVB/NJ	ENSMUSG00205044332	lncRNA gene	Chr9:57823395-57843104 (+)
JF1/MsJ	ENSUMUG00000049958	lncRNA gene	Chr9:57537362-57557018 (+)
LP/J	ENSMUSG00230039917	lncRNA gene	Chr9:57746196-57765898 (+)
NOD/ShiLtJ	ENSMUSG00190045931	lncRNA gene	Chr9:57577625-57597330 (+)
NZO/HlLtJ	ENSMUSG00225028508	lncRNA gene	Chr9:57802766-57822471 (+)
PWK/PhJ	ENSLUMG00010040744	lncRNA gene	Chr9:57495389-57513775 (+)
SPRET/EiJ	ENSMSPG00010028471	lncRNA gene	Chr9:58561611-58583069 (+)
WSB/EiJ	ENSIUOG00005040441	lncRNA gene	Chr9:56997060-57015441 (+)

Homology

• Gene Tree
  Gm49334
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  47

• Ensembl
  ENSMUSG00000111809 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111809	Ensembl Gene Model | MGI Sequence Detail	106269	C57BL/6J
transcript	ENSMUST00000363676	Ensembl | MGI Sequence Detail	1307	Not Applicable

References

• Summaries
  All 3

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm49334:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr85485	Chr9:60434524-60434533 (+)	53 bp
Tssr2893	Chr9:60505137-60505140 (+)	70,663 bp