Gm49327 Pseudogene Detail

Summary

• Symbol
  Gm49327
• Name
  predicted gene, 49327

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:6121512
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:17983419-17988884 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  99 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6121512	pseudogene	Chr12:17932052-17989661 (+)
129S1/SvImJ	ENSMUSG00200024057	pseudogene	Chr12:15017849-15024295 (+)
A/J	ENSMUSG00195020417	pseudogene	Chr12:15031588-15038048 (+)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180010844	pseudogene	Chr12:15043517-15049973 (+)
C3H/HeJ	ENSMUSG00175005981	pseudogene	Chr12:15046044-15052490 (+)
C57BL/6NJ	ENSMUSG00215006406	pseudogene	Chr12:14818470-14824932 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210008330	pseudogene	Chr12:15057985-15064429 (+)
DBA/2J	ENSMUSG00185003911	pseudogene	Chr12:14964445-14970893 (+)
FVB/NJ	ENSMUSG00205002150	pseudogene	Chr12:15710013-15714603 (-)
JF1/MsJ	ENSUMUG00000011430	pseudogene	Chr12:14879445-14885911 (+)
LP/J	ENSMUSG00230022039	pseudogene	Chr12:16783694-16790161 (+)
NOD/ShiLtJ	ENSMUSG00190014070	pseudogene	Chr12:16252863-16259309 (+)
NZO/HlLtJ	ENSMUSG00225030346	pseudogene	Chr12:18888234-18894696 (+)
PWK/PhJ	ENSLUMG00010005155	pseudogene	Chr12:14670878-14677354 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005001826	pseudogene	Chr12:15041477-15047927 (+)

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  46

• Ensembl
  ENSMUSG00000113536 (Evidence), ENSMUSG00000121309 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113536	Ensembl Gene Model | MGI Sequence Detail	5466	C57BL/6J
transcript	ENSMUST00000221109	Ensembl | MGI Sequence Detail	540	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;