Gm49326 Pseudogene Detail

Summary

• Symbol
  Gm49326
• Name
  predicted gene, 49326

• Feature Type
  pseudogene
• IDs
  MGI:6121511
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr12:17932198-17932323 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  66 from dbSNP Build 142
• Strain Annotations
  31

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6121511	pseudogene	Chr12:17932198-17932323 (+)
129S1/SvImJ	ENSMUSG00200023120	pseudogene	Chr12:14966447-14966572 (+)
A/J	ENSMUSG00195021171	pseudogene	Chr12:14980185-14980310 (+)
AKR/J	ENSMUSG00220027015	pseudogene	Chr12:15064479-15064604 (+)
BALB/cJ	ENSMUSG00180010726	pseudogene	Chr12:14958778-14958903 (+)
C3H/HeJ	ENSMUSG00175006140	pseudogene	Chr12:14994647-14994772 (+)
C57BL/6NJ	ENSMUSG00215005613	pseudogene	Chr12:14767496-14767621 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006226	pseudogene	Chr12:14476022-14476147 (+)
CBA/J	ENSMUSG00210008386	pseudogene	Chr12:15006573-15006698 (+)
DBA/2J	ENSMUSG00185004097	pseudogene	Chr12:14913041-14913166 (+)
FVB/NJ	ENSMUSG00205001683	pseudogene	Chr12:14840022-14840147 (+)
JF1/MsJ	ENSUMUG00000008280	pseudogene	Chr12:20405156-20405281 (-)
JF1/MsJ	ENSUMUG00000008610	pseudogene	Chr12:14828472-14828597 (+)
JF1/MsJ	ENSUMUG00000012540	pseudogene	Chr12:18886059-18886184 (-)
JF1/MsJ	ENSUMUG00000012662	pseudogene	Chr12:19451872-19451997 (-)
LP/J	ENSMUSG00230023341	pseudogene	Chr12:19365290-19365415 (-)
LP/J	ENSMUSG00230023368	pseudogene	Chr12:19788817-19788942 (-)
LP/J	ENSMUSG00230023389	pseudogene	Chr12:20030004-20030129 (-)
LP/J	ENSMUSG00230008274	pseudogene	Chr12:21345515-21345640 (-)
LP/J	ENSMUSG00230021627	pseudogene	Chr12:16732273-16732398 (+)
LP/J	ENSMUSG00230023322	pseudogene	Chr12:18216313-18216438 (+)
NOD/ShiLtJ	ENSMUSG00190014410	pseudogene	Chr12:16201468-16201593 (+)
NZO/HlLtJ	ENSMUSG00225035645	pseudogene	Chr12:23548059-23548184 (-)
NZO/HlLtJ	ENSMUSG00225035505	pseudogene	Chr12:21469347-21469472 (-)
NZO/HlLtJ	ENSMUSG00225030464	pseudogene	Chr12:20320860-20320985 (+)
NZO/HlLtJ	ENSMUSG00225030161	pseudogene	Chr12:18836813-18836938 (+)
NZO/HlLtJ	ENSMUSG00225035558	pseudogene	Chr12:22232179-22232304 (-)
NZO/HlLtJ	ENSMUSG00225035543	pseudogene	Chr12:21990859-21990984 (-)
PWK/PhJ	ENSLUMG00010005043	pseudogene	Chr12:14620002-14620127 (+)
SPRET/EiJ	ENSMSPG00010003222	pseudogene	Chr12:15560762-15560887 (+)
WSB/EiJ	ENSIUOG00005001906	pseudogene	Chr12:14990037-14990162 (+)

Homology

• Gene Tree
  Gm49326
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33

• Ensembl
  ENSMUSG00000113294 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113294	Ensembl Gene Model | MGI Sequence Detail	126	C57BL/6J
transcript	ENSMUST00000223226	Ensembl | MGI Sequence Detail	126	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm49326:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr112902	Chr12:17931860-17931936 (+)	-300 bp
Tssr112903	Chr12:17931937-17931977 (+)	-241 bp