Gm49312 Gene Detail

Summary

• Symbol
  Gm49312
• Name
  predicted gene, 49312

• Feature Type
  lncRNA gene
• IDs
  MGI:6118817
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr15:38079173-38135553 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1784 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6118817	lncRNA gene	Chr15:38079173-38135553 (+)
129S1/SvImJ	ENSMUSG00200027753	lncRNA gene	Chr15:35077233-35077759 (+)
A/J	ENSMUSG00195037962	lncRNA gene	Chr15:35001577-35002103 (+)
AKR/J	ENSMUSG00220030250	lncRNA gene	Chr15:34915450-34915976 (+)
BALB/cJ	ENSMUSG00180032566	lncRNA gene	Chr15:34986395-34986921 (+)
C3H/HeJ	ENSMUSG00175027930	lncRNA gene	Chr15:35185145-35185671 (+)
C57BL/6NJ	ENSMUSG00215023170	lncRNA gene	Chr15:34992911-34993437 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005010854	lncRNA gene	Chr15:34991113-34991638 (+)
CBA/J	ENSMUSG00210018231	lncRNA gene	Chr15:35099472-35099998 (+)
DBA/2J	ENSMUSG00185036499	lncRNA gene	Chr15:35080307-35080833 (+)
FVB/NJ	ENSMUSG00205034308	lncRNA gene	Chr15:34967963-34968489 (+)
JF1/MsJ	ENSUMUG00000033782	lncRNA gene	Chr15:34971901-34972427 (+)
LP/J	ENSMUSG00230012404	lncRNA gene	Chr15:38458337-38458863 (+)
NOD/ShiLtJ	ENSMUSG00190031286	lncRNA gene	Chr15:35045264-35045790 (+)
NZO/HlLtJ	ENSMUSG00225031865	lncRNA gene	Chr15:38771735-38772261 (+)
PWK/PhJ	ENSLUMG00010032497	lncRNA gene	Chr15:35121726-35122252 (+)
SPRET/EiJ	ENSMSPG00010013393	lncRNA gene	Chr15:35786175-35786701 (+)
WSB/EiJ	ENSIUOG00005033098	lncRNA gene	Chr15:35094711-35095237 (+)

Homology

• Gene Tree
  Gm49312
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28

• Ensembl
  ENSMUSG00000115771 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115771	Ensembl Gene Model | MGI Sequence Detail	56381	C57BL/6J
transcript	ENSMUST00000286567	Ensembl | MGI Sequence Detail	1710	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm49312:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr131105	Chr15:38079288-38079338 (+)	140 bp
Tssr131106	Chr15:38079345-38079361 (+)	180 bp
Tssr131107	Chr15:38088227-38088232 (+)	9,057 bp