Gm49306 Gene Detail

Summary

• Symbol
  Gm49306
• Name
  predicted gene, 49306

• Feature Type
  lncRNA gene
• IDs
  MGI:6118806
  NCBI Gene: 118568147
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:48284500-48296477 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  449 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6118806	lncRNA gene	Chr14:48197429-48298600 (+)
129S1/SvImJ	ENSMUSG00200016696	lncRNA gene	Chr14:37123237-37134699 (+)
A/J	ENSMUSG00195025355	lncRNA gene	Chr14:37328738-37340203 (+)
AKR/J	ENSMUSG00220042597	lncRNA gene	Chr14:36703642-36715107 (+)
BALB/cJ	ENSMUSG00180047701	lncRNA gene	Chr14:36937523-36948987 (+)
C3H/HeJ	ENSMUSG00175031692	lncRNA gene	Chr14:38617942-38629401 (+)
C57BL/6NJ	ENSMUSG00215038991	lncRNA gene	Chr14:37305582-37317047 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005010465	lncRNA gene	Chr14:39105924-39117365 (+)
CBA/J	ENSMUSG00210041856	lncRNA gene	Chr14:37263178-37274643 (+)
DBA/2J	ENSMUSG00185054789	lncRNA gene	Chr14:42035860-42047325 (+)
FVB/NJ	ENSMUSG00205047983	lncRNA gene	Chr14:36463205-36474684 (+)
JF1/MsJ	ENSUMUG00000051696	lncRNA gene	Chr14:54081431-54092888 (+)
LP/J	ENSMUSG00230053289	lncRNA gene	Chr14:54290123-54301586 (+)
NOD/ShiLtJ	ENSMUSG00190047000	lncRNA gene	Chr14:36937134-36948620 (+)
NZO/HlLtJ	ENSMUSG00225052141	lncRNA gene	Chr14:44553246-44564665 (+)
PWK/PhJ	ENSLUMG00010040761	lncRNA gene	Chr14:36529760-36541237 (+)
SPRET/EiJ	ENSMSPG00010003505	lncRNA gene	Chr14:39875696-39887567 (+)
WSB/EiJ	ENSIUOG00005044165	lncRNA gene	Chr14:36827424-36838647 (+)

Homology

• Gene Tree
  Gm49306
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  1

• Ensembl
  ENSMUSG00000115060 (Evidence)
• NCBI Gene
  118568147

Representative Sequences			Length	Strain/Species
genomic	118568147	NCBI Gene Model | MGI Sequence Detail	11978	C57BL/6J
transcript	XR_004938637	RefSeq | MGI Sequence Detail	1045	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;