Gm49273 Pseudogene Detail

Summary

• Symbol
  Gm49273
• Name
  predicted gene, 49273

• Feature Type
  pseudogene
• IDs
  MGI:6118757
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr15:103566266-103570108 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  15 from dbSNP Build 142
• Strain Annotations
  48

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6118757	pseudogene	Chr15:103566266-103570108 (+)
129S1/SvImJ	ENSMUSG00200052819	pseudogene	Chr15:100801191-100804017 (+)
A/J	ENSMUSG00195047301	pseudogene	Chr15:100671467-100674293 (+)
AKR/J	ENSMUSG00220050241	pseudogene	Chr15:100652691-100655521 (+)
BALB/cJ	ENSMUSG00180047872	pseudogene	Chr15:100563848-100566684 (+)
C3H/HeJ	ENSMUSG00175047477	pseudogene	Chr15:100882560-100885392 (+)
C57BL/6NJ	ENSMUSG00215001467	pseudogene	Chr3:14844021-14847863 (-)
C57BL/6NJ	ENSMUSG00215022964	pseudogene	ChrX:16466516-16470358 (-)
C57BL/6NJ	ENSMUSG00215003318	pseudogene	Chr15:44356692-44360534 (+)
C57BL/6NJ	ENSMUSG00215027829	pseudogene	Chr1:189087733-189091575 (-)
C57BL/6NJ	ENSMUSG00215029447	pseudogene	Chr3:125633517-125637359 (-)
C57BL/6NJ	ENSMUSG00215025853	pseudogene	ChrX:79017009-79020851 (+)
C57BL/6NJ	ENSMUSG00215051871	pseudogene	Chr15:100607895-100611737 (+)
C57BL/6NJ	ENSMUSG00215022249	pseudogene	Chr12:85994257-85998099 (+)
C57BL/6NJ	ENSMUSG00215036057	pseudogene	Chr12:61421967-61425809 (+)
C57BL/6NJ	ENSMUSG00215025717	pseudogene	Chr14:5865744-5869586 (-)
C57BL/6NJ	ENSMUSG00215010593	pseudogene	Chr12:54693493-54697335 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005000722	pseudogene	Chr1:29664242-29668084 (-)
CAST/EiJ	ENSTCUG00005052162	pseudogene	Chr17:30188529-30195671 (+)
CAST/EiJ	ENSTCUG00005033138	pseudogene	Chr14:64041200-64045042 (+)
CAST/EiJ	ENSTCUG00005013073	pseudogene	Chr16:44000882-44004724 (+)
CAST/EiJ	ENSTCUG00005008254	pseudogene	ChrX:110052302-110056144 (-)
CAST/EiJ	ENSTCUG00005008225	pseudogene	ChrX:103651773-103655615 (-)
CAST/EiJ	ENSTCUG00005008219	pseudogene	ChrX:103209771-103213613 (+)
CAST/EiJ	ENSTCUG00005019596	pseudogene	Chr9:24028262-24067994 (-)
CAST/EiJ	ENSTCUG00005034434	pseudogene	Chr8:106197589-106201431 (-)
CAST/EiJ	ENSTCUG00005017963	pseudogene	Chr8:90977333-90981174 (+)
CAST/EiJ	ENSTCUG00005027482	pseudogene	Chr6:6491254-6495096 (+)
CBA/J	ENSMUSG00210033561	pseudogene	Chr15:100624415-100627239 (+)
DBA/2J	ENSMUSG00185042925	pseudogene	Chr15:100638968-100641798 (+)
FVB/NJ	ENSMUSG00205048836	pseudogene	Chr15:100343744-100346562 (+)
JF1/MsJ	ENSUMUG00000057373	pseudogene	Chr15:100117130-100119928 (+)
LP/J	ENSMUSG00230007108	pseudogene	Chr15:104012079-104014911 (+)
NOD/ShiLtJ	ENSMUSG00190050410	pseudogene	Chr15:100583698-100586533 (+)
NZO/HlLtJ	ENSMUSG00225043709	pseudogene	ChrX:150145776-150149618 (+)
NZO/HlLtJ	ENSMUSG00225033431	pseudogene	Chr11:18664840-18668682 (+)
NZO/HlLtJ	ENSMUSG00225024318	pseudogene	Chr15:10412353-10416195 (-)
NZO/HlLtJ	ENSMUSG00225028296	pseudogene	Chr15:104188129-104191971 (+)
NZO/HlLtJ	ENSMUSG00225038297	pseudogene	Chr15:48083405-48087247 (+)
NZO/HlLtJ	ENSMUSG00225021685	pseudogene	Chr3:102406111-102409953 (-)
NZO/HlLtJ	ENSMUSG00225041622	pseudogene	ChrX:32328813-32332655 (-)
NZO/HlLtJ	ENSMUSG00225004288	pseudogene	Chr3:130520880-130524722 (-)
NZO/HlLtJ	ENSMUSG00225021275	pseudogene	Chr7:48406380-48410221 (+)
NZO/HlLtJ	ENSMUSG00225049151	pseudogene	Chr8:71477309-71481151 (-)
NZO/HlLtJ	ENSMUSG00225050605	pseudogene	Chr2:49745794-49749636 (-)
PWK/PhJ	ENSLUMG00010000129	pseudogene	Chr1:22217559-22221401 (-)
SPRET/EiJ	ENSMSPG00010050386	pseudogene	Chr15:102118557-102121430 (+)
WSB/EiJ	ENSIUOG00005042989	pseudogene	Chr15:100729414-100732250 (+)

Homology

• Gene Tree
  Gm49273
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  50

• Ensembl
  ENSMUSG00000115279 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115279	Ensembl Gene Model | MGI Sequence Detail	3843	C57BL/6J
transcript	ENSMUST00000228191	Ensembl | MGI Sequence Detail	3843	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;