Gm49248 Pseudogene Detail

Summary

• Symbol
  Gm49248
• Name
  predicted gene, 49248

• Feature Type
  pseudogene
• IDs
  MGI:6118718
  NCBI Gene: 118567993
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:22459488-22464925 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  3 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6118718	pseudogene	Chr12:22458744-22464945 (-)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195020678	pseudogene	Chr12:17636344-17642169 (+)
AKR/J	ENSMUSG00220030203	pseudogene	Chr12:16519058-16524881 (-)
BALB/cJ	ENSMUSG00180009968	pseudogene	Chr12:17486739-17488990 (-)
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006412	pseudogene	Chr12:15909723-15915235 (-)
CBA/J	ENSMUSG00210007696	pseudogene	Chr12:16065737-16071589 (+)
DBA/2J	ENSMUSG00185004419	pseudogene	Chr12:17780751-17786200 (-)
FVB/NJ	ENSMUSG00205001753	pseudogene	Chr12:16980024-16985858 (-)
JF1/MsJ	ENSUMUG00000006996	pseudogene	Chr12:22533515-22538941 (-)
LP/J	ENSMUSG00230007459	pseudogene	Chr12:23186520-23191942 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225034509	pseudogene	Chr12:25136913-25142335 (+)
PWK/PhJ	ENSLUMG00010004655	pseudogene	Chr12:17365884-17371313 (-)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm49248
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  15

• Ensembl
  ENSMUSG00000113659 (Evidence)
• NCBI Gene
  118567993

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113659	Ensembl Gene Model | MGI Sequence Detail	5438	C57BL/6J
transcript	ENSMUST00000223082	Ensembl | MGI Sequence Detail	573	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;