Gm49229 Pseudogene Detail

Summary

• Symbol
  Gm49229
• Name
  predicted gene, 49229

• Feature Type
  pseudogene
• IDs
  MGI:6118690
  NCBI Gene: 118568228
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:57211145-57211486 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  100 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6118690	pseudogene	Chr15:57211139-57211492 (+)
129S1/SvImJ	ENSMUSG00200031833	pseudogene	Chr15:54191443-54191784 (+)
A/J	ENSMUSG00195006716	pseudogene	Chr15:54257703-54258044 (+)
AKR/J	ENSMUSG00220021844	pseudogene	Chr15:54234052-54234393 (+)
BALB/cJ	ENSMUSG00180009244	pseudogene	Chr15:54175682-54176023 (+)
C3H/HeJ	ENSMUSG00175005069	pseudogene	Chr15:54428517-54428858 (+)
C57BL/6NJ	ENSMUSG00215013186	pseudogene	Chr15:54174924-54175265 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005007294	pseudogene	Chr15:54061099-54061440 (+)
CBA/J	ENSMUSG00210007215	pseudogene	Chr15:54255785-54256126 (+)
DBA/2J	ENSMUSG00185027294	pseudogene	Chr15:54233372-54233713 (+)
FVB/NJ	ENSMUSG00205006892	pseudogene	Chr15:54069934-54070275 (+)
JF1/MsJ	ENSUMUG00000033694	pseudogene	Chr15:54035654-54035995 (+)
LP/J	ENSMUSG00230008957	pseudogene	Chr15:57536278-57536619 (+)
NOD/ShiLtJ	ENSMUSG00190018744	pseudogene	Chr15:54242724-54243065 (+)
NZO/HlLtJ	ENSMUSG00225028857	pseudogene	Chr15:57878506-57878847 (+)
PWK/PhJ	ENSLUMG00010028499	pseudogene	Chr15:54322599-54322940 (+)
SPRET/EiJ	ENSMSPG00010024912	pseudogene	Chr15:55506464-55506799 (+)
WSB/EiJ	ENSIUOG00005006625	pseudogene	Chr15:54252776-54253117 (+)

Homology

• Gene Tree
  Gm49229
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000115226 (Evidence)
• NCBI Gene
  118568228

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115226	Ensembl Gene Model | MGI Sequence Detail	342	C57BL/6J
transcript	ENSMUST00000226272	Ensembl | MGI Sequence Detail	342	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm49229:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr4597	Chr15:57211080-57211091 (+)	-59 bp