Gm49227 Gene Detail

Summary

• Symbol
  Gm49227
• Name
  predicted gene, 49227

• Feature Type
  lncRNA gene
• IDs
  MGI:6118687
  NCBI Gene: 118568247
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:84876904-84879782 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  302 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6118687	lncRNA gene	Chr16:84876904-84880315 (+)
129S1/SvImJ	ENSMUSG00200038582	lncRNA gene	Chr16:81776480-81779761 (+)
A/J	ENSMUSG00195030302	lncRNA gene	Chr16:81571538-81574820 (+)
AKR/J	ENSMUSG00220017834	lncRNA gene	Chr16:81723275-81726556 (+)
BALB/cJ	ENSMUSG00180002101	lncRNA gene	Chr16:81615909-81619191 (+)
C3H/HeJ	ENSMUSG00175016292	lncRNA gene	Chr16:81931523-81934805 (+)
C57BL/6NJ	ENSMUSG00215035451	lncRNA gene	Chr16:81741491-81744772 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005007684	lncRNA gene	Chr16:81395883-81399151 (+)
CBA/J	ENSMUSG00210044497	lncRNA gene	Chr16:81841368-81844650 (+)
DBA/2J	ENSMUSG00185005431	lncRNA gene	Chr16:81783389-81786671 (+)
FVB/NJ	ENSMUSG00205027978	lncRNA gene	Chr16:81601116-81604398 (+)
JF1/MsJ	ENSUMUG00000044405	lncRNA gene	Chr16:81914495-81917741 (+)
LP/J	ENSMUSG00230036163	lncRNA gene	Chr16:84336583-84339864 (+)
NOD/ShiLtJ	ENSMUSG00190027882	lncRNA gene	Chr16:81788740-81792022 (+)
NZO/HlLtJ	ENSMUSG00225031326	lncRNA gene	Chr16:87471949-87475231 (+)
PWK/PhJ	ENSLUMG00010005329	lncRNA gene	Chr16:81573311-81576392 (+)
SPRET/EiJ	ENSMSPG00010032576	lncRNA gene	Chr16:82549733-82552935 (+)
WSB/EiJ	ENSIUOG00005018005	lncRNA gene	Chr16:81712793-81716075 (+)

Homology

• Gene Tree
  Gm49227
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Genomic Mutations
  1 involving Gm49227
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000115469 (Evidence)
• NCBI Gene
  118568247

Representative Sequences			Length	Strain/Species
genomic	118568247	NCBI Gene Model | MGI Sequence Detail	2879	C57BL/6J
transcript	XR_004939295	RefSeq | MGI Sequence Detail	595	C57BL/6J

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:117029 Davisson M, et al., Impact of trisomy on fertility and meiosis in male mice. Hum Reprod. 2007 Feb;22(2):468-76