Gm49226 Gene Detail

Summary

• Symbol
  Gm49226
• Name
  predicted gene, 49226

• Feature Type
  lncRNA gene
• IDs
  MGI:6118685
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:84945717-84952162 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  390 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6118685	lncRNA gene	Chr16:84945717-84952162 (+)
129S1/SvImJ	ENSMUSG00200038604	lncRNA gene	Chr16:81845205-81851654 (+)
A/J	ENSMUSG00195030362	lncRNA gene	Chr16:81646558-81653010 (+)
AKR/J	ENSMUSG00220017847	lncRNA gene	Chr16:81792008-81798455 (+)
BALB/cJ	ENSMUSG00180002106	lncRNA gene	Chr16:81691208-81697625 (+)
C3H/HeJ	ENSMUSG00175016332	lncRNA gene	Chr16:82006544-82012994 (+)
C57BL/6NJ	ENSMUSG00215035593	lncRNA gene	Chr16:81810217-81816662 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005007678	lncRNA gene	Chr16:81464381-81470811 (+)
CBA/J	ENSMUSG00210044579	lncRNA gene	Chr16:81916669-81923086 (+)
DBA/2J	ENSMUSG00185005437	lncRNA gene	Chr16:81858406-81864852 (+)
FVB/NJ	ENSMUSG00205028103	lncRNA gene	Chr16:81676164-81682608 (+)
JF1/MsJ	ENSUMUG00000044312	lncRNA gene	Chr16:81984222-81990839 (+)
LP/J	ENSMUSG00230035864	lncRNA gene	Chr16:84405306-84411751 (+)
NOD/ShiLtJ	ENSMUSG00190027971	lncRNA gene	Chr16:81863766-81870203 (+)
NZO/HlLtJ	ENSMUSG00225031188	lncRNA gene	Chr16:87547249-87553666 (+)
PWK/PhJ	ENSLUMG00010005325	lncRNA gene	Chr16:81656547-81663145 (+)
SPRET/EiJ	ENSMSPG00010032545	lncRNA gene	Chr16:82617250-82623552 (+)
WSB/EiJ	ENSIUOG00005018020	lncRNA gene	Chr16:81787846-81794286 (+)

Homology

• Gene Tree
  Gm49226
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Genomic Mutations
  1 involving Gm49226
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000114988 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114988	Ensembl Gene Model | MGI Sequence Detail	6446	C57BL/6J
transcript	ENSMUST00000227036	Ensembl | MGI Sequence Detail	433	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:117029 Davisson M, et al., Impact of trisomy on fertility and meiosis in male mice. Hum Reprod. 2007 Feb;22(2):468-76

TSS for Gm49226:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr139208	Chr16:84949664-84949682 (+)	3,956 bp