Gm49212 Gene Detail

Summary

• Symbol
  Gm49212
• Name
  predicted gene, 49212

• Feature Type
  lncRNA gene
• IDs
  MGI:6118665
  NCBI Gene: 118568195
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:55904351-55913229 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  392 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6118665	lncRNA gene	Chr15:55904351-55913255 (-)
129S1/SvImJ	ENSMUSG00200031363	lncRNA gene	Chr15:52888194-52891476 (-)
A/J	ENSMUSG00195006575	lncRNA gene	Chr15:52923411-52926695 (-)
AKR/J	ENSMUSG00220021627	lncRNA gene	Chr15:52924233-52927506 (-)
BALB/cJ	ENSMUSG00180009394	lncRNA gene	Chr15:52874167-52877449 (-)
C3H/HeJ	ENSMUSG00175004878	lncRNA gene	Chr15:53127175-53130455 (-)
C57BL/6NJ	ENSMUSG00215017792	lncRNA gene	Chr15:52867923-52871204 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005007251	lncRNA gene	Chr15:52746035-52749254 (-)
CBA/J	ENSMUSG00210007266	lncRNA gene	Chr15:52954366-52957667 (-)
DBA/2J	ENSMUSG00185028060	lncRNA gene	Chr15:52931888-52935173 (-)
FVB/NJ	ENSMUSG00205006805	lncRNA gene	Chr15:52778964-52782249 (-)
JF1/MsJ	ENSUMUG00000030581	lncRNA gene	Chr15:52766745-52770017 (-)
LP/J	ENSMUSG00230009012	lncRNA gene	Chr15:56246877-56250158 (-)
NOD/ShiLtJ	ENSMUSG00190017958	lncRNA gene	Chr15:52927430-52930711 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010028660	lncRNA gene	Chr15:52996702-53003085 (-)
SPRET/EiJ	ENSMSPG00010024549	lncRNA gene	Chr15:54107214-54110440 (-)
WSB/EiJ	ENSIUOG00005006513	lncRNA gene	Chr15:52927231-52930510 (-)

Homology

• Gene Tree
  Gm49212
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  4

• Ensembl
  ENSMUSG00000115678 (Evidence)
• NCBI Gene
  118568195

Representative Sequences			Length	Strain/Species
genomic	118568195	NCBI Gene Model | MGI Sequence Detail	8879	C57BL/6J
transcript	XR_004938959	RefSeq | MGI Sequence Detail	1517	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm49212:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr134355	Chr15:55913244-55913247 (-)	-17 bp