Gm49209 Pseudogene Detail

Summary

• Symbol
  Gm49209
• Name
  predicted gene, 49209

• Feature Type
  pseudogene
• IDs
  MGI:6118661
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:108464251-108466744 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  185 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6118661	pseudogene	Chr9:108464251-108466744 (+)
129S1/SvImJ	ENSMUSG00200044557	pseudogene	Chr9:105662151-105664644 (+)
A/J	ENSMUSG00195046483	pseudogene	Chr9:104880923-104883419 (+)
AKR/J	ENSMUSG00220028450	pseudogene	Chr9:105268263-105270759 (+)
BALB/cJ	ENSMUSG00180034654	pseudogene	Chr9:105197395-105199891 (+)
C3H/HeJ	ENSMUSG00175045570	pseudogene	Chr9:105539664-105542160 (+)
C57BL/6NJ	ENSMUSG00215042862	pseudogene	Chr9:105517047-105519540 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035234	pseudogene	Chr9:105289648-105292129 (+)
CBA/J	ENSMUSG00210044448	pseudogene	Chr9:105386986-105389465 (+)
DBA/2J	ENSMUSG00185046221	pseudogene	Chr9:105549094-105551590 (+)
FVB/NJ	ENSMUSG00205049888	pseudogene	Chr9:105550482-105552978 (+)
JF1/MsJ	ENSUMUG00000054981	pseudogene	Chr9:105376378-105378857 (+)
LP/J	ENSMUSG00230050255	pseudogene	Chr9:105690970-105693463 (+)
NOD/ShiLtJ	ENSMUSG00190050439	pseudogene	Chr9:105187530-105190026 (+)
NZO/HlLtJ	ENSMUSG00225024439	pseudogene	Chr9:105922307-105924803 (+)
PWK/PhJ	ENSLUMG00010045097	pseudogene	Chr9:105338593-105341074 (+)
SPRET/EiJ	ENSMSPG00010048971	pseudogene	Chr9:107164854-107167340 (+)
WSB/EiJ	ENSIUOG00005047729	pseudogene	Chr9:104639105-104641598 (+)

Homology

• Gene Tree
  Gm49209
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000115688 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115688	Ensembl Gene Model | MGI Sequence Detail	2494	C57BL/6J
transcript	ENSMUST00000227071	Ensembl | MGI Sequence Detail	670	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;