Gm49189 Gene Detail

Summary

• Symbol
  Gm49189
• Name
  predicted gene, 49189

• Feature Type
  lncRNA gene
• IDs
  MGI:6118629
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:47539439-47542942 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  253 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6118629	lncRNA gene	Chr14:47539439-47542942 (-)
129S1/SvImJ	ENSMUSG00200017060	lncRNA gene	Chr14:36361564-36365284 (-)
A/J	ENSMUSG00195024640	lncRNA gene	Chr14:36567229-36570949 (-)
AKR/J	ENSMUSG00220043813	lncRNA gene	Chr14:35942173-35945895 (-)
BALB/cJ	ENSMUSG00180044455	lncRNA gene	Chr14:36176082-36179803 (-)
C3H/HeJ	ENSMUSG00175029507	lncRNA gene	Chr14:37856526-37860245 (-)
C57BL/6NJ	ENSMUSG00215038816	lncRNA gene	Chr14:36560025-36563530 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005010375	lncRNA gene	Chr14:38348720-38352225 (-)
CBA/J	ENSMUSG00210043141	lncRNA gene	Chr14:36501752-36505471 (-)
DBA/2J	ENSMUSG00185056102	lncRNA gene	Chr14:41291374-41294866 (-)
FVB/NJ	ENSMUSG00205048284	lncRNA gene	Chr14:35719255-35722983 (-)
JF1/MsJ	ENSUMUG00000055464	lncRNA gene	Chr14:53335786-53339289 (-)
LP/J	ENSMUSG00230053469	lncRNA gene	Chr14:53544757-53548260 (-)
NOD/ShiLtJ	ENSMUSG00190046021	lncRNA gene	Chr14:36193263-36196991 (-)
NZO/HlLtJ	ENSMUSG00225051003	lncRNA gene	Chr14:43798699-43802397 (-)
PWK/PhJ	ENSLUMG00010044682	lncRNA gene	Chr14:35783063-35786552 (-)
SPRET/EiJ	ENSMSPG00010003667	lncRNA gene	Chr14:39109343-39112795 (-)
WSB/EiJ	ENSIUOG00005039229	lncRNA gene	Chr14:36066607-36070132 (-)

Homology

• Gene Tree
  Gm49189
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000115082 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115082	Ensembl Gene Model | MGI Sequence Detail	3504	C57BL/6J
transcript	ENSMUST00000228200	Ensembl | MGI Sequence Detail	525	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;