Gm49168 Pseudogene Detail

Summary

• Symbol
  Gm49168
• Name
  predicted gene, 49168

• Feature Type
  pseudogene
• IDs
  MGI:6118598
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:33940033-33940342 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  151 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6118598	pseudogene	Chr14:33940033-33940342 (+)
129S1/SvImJ	ENSMUSG00200038178	pseudogene	Chr14:25795090-25795399 (+)
A/J	ENSMUSG00195014843	pseudogene	Chr14:26840926-26841235 (+)
AKR/J	ENSMUSG00220037921	pseudogene	Chr14:25959630-25959939 (+)
BALB/cJ	ENSMUSG00180029214	pseudogene	Chr14:25929391-25929700 (+)
C3H/HeJ	ENSMUSG00175040844	pseudogene	Chr14:25996508-25996817 (+)
C57BL/6NJ	ENSMUSG00215033622	pseudogene	Chr14:26233228-26233537 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005024250	pseudogene	Chr14:26071643-26071952 (+)
CBA/J	ENSMUSG00210045005	pseudogene	Chr14:26243699-26244008 (+)
DBA/2J	ENSMUSG00185043179	pseudogene	Chr14:30504568-30504877 (+)
FVB/NJ	ENSMUSG00205037369	pseudogene	Chr14:26101231-26101540 (+)
JF1/MsJ	ENSUMUG00000050848	pseudogene	Chr14:37785416-37785725 (+)
LP/J	ENSMUSG00230038245	pseudogene	Chr14:37822455-37822764 (+)
NOD/ShiLtJ	ENSMUSG00190019713	pseudogene	Chr14:26253585-26253894 (+)
NZO/HlLtJ	ENSMUSG00225042004	pseudogene	Chr14:32128076-32128385 (+)
PWK/PhJ	ENSLUMG00010023522	pseudogene	Chr14:14367628-14367937 (+)
SPRET/EiJ	ENSMSPG00010042914	pseudogene	Chr14:27932576-27932885 (+)
WSB/EiJ	ENSIUOG00005012468	pseudogene	Chr14:26078706-26079015 (+)

Homology

• Gene Tree
  Gm49168
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000115299 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115299	Ensembl Gene Model | MGI Sequence Detail	310	C57BL/6J
transcript	ENSMUST00000227397	Ensembl | MGI Sequence Detail	310	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm49168:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125068	Chr14:33940166-33940198 (+)	149 bp