Gm49164 Gene Detail

Summary

• Symbol
  Gm49164
• Name
  predicted gene, 49164

• Feature Type
  lncRNA gene
• IDs
  MGI:6118590
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr14:73966008-74193501 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  5817 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6118590	lncRNA gene	Chr14:73966008-74193501 (+)
129S1/SvImJ	ENSMUSG00200011362	lncRNA gene	Chr14:62408148-62628941 (+)
A/J	ENSMUSG00195004186	lncRNA gene	Chr14:62536028-62763545 (+)
AKR/J	ENSMUSG00220007463	lncRNA gene	Chr14:61859153-62081226 (+)
BALB/cJ	ENSMUSG00180023668	lncRNA gene	Chr14:62142509-62369997 (+)
C3H/HeJ	ENSMUSG00175031535	lncRNA gene	Chr14:63883687-64105756 (+)
C57BL/6NJ	ENSMUSG00215026532	lncRNA gene	Chr14:62117910-62345422 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032802	lncRNA gene	Chr14:63762911-64009386 (+)
CBA/J	ENSMUSG00210010350	lncRNA gene	Chr14:62522368-62744406 (+)
DBA/2J	ENSMUSG00185024452	lncRNA gene	Chr14:67669090-67891135 (+)
FVB/NJ	ENSMUSG00205026846	lncRNA gene	Chr14:61959069-62189633 (+)
JF1/MsJ	ENSUMUG00000046246	lncRNA gene	Chr14:78856931-79103299 (+)
LP/J	ENSMUSG00230017338	lncRNA gene	Chr14:79758305-79979078 (+)
NOD/ShiLtJ	ENSMUSG00190011543	lncRNA gene	Chr14:62286659-62514113 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010011162	lncRNA gene	Chr14:61724714-61975870 (+)
SPRET/EiJ	ENSMSPG00010029369	lncRNA gene	Chr14:65352420-65590303 (+)
WSB/EiJ	ENSIUOG00005023867	lncRNA gene	Chr14:61732030-61953122 (+)

Homology

• Gene Tree
  Gm49164
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000115289 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115289	Ensembl Gene Model | MGI Sequence Detail	227494	C57BL/6J
transcript	ENSMUST00000228116	Ensembl | MGI Sequence Detail	1244	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm49164:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr126567	Chr14:74036319-74036322 (+)	70,313 bp
Tssr126568	Chr14:74116940-74116975 (+)	150,950 bp