Gm49162 Gene Detail

Summary

• Symbol
  Gm49162
• Name
  predicted gene, 49162

• Feature Type
  lncRNA gene
• IDs
  MGI:6118586
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:19303034-19395508 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  3712 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6118586	lncRNA gene	Chr15:19303034-19395508 (-)
129S1/SvImJ	ENSMUSG00200004384	lncRNA gene	Chr15:16330571-16429539 (-)
A/J	ENSMUSG00195011823	lncRNA gene	Chr15:16218793-16319035 (-)
AKR/J	ENSMUSG00220001680	lncRNA gene	Chr15:16133439-16226093 (-)
BALB/cJ	ENSMUSG00180009876	lncRNA gene	Chr15:16200647-16300807 (-)
C3H/HeJ	ENSMUSG00175002045	lncRNA gene	Chr15:16359591-16459746 (-)
C57BL/6NJ	ENSMUSG00215008078	lncRNA gene	Chr15:16245275-16337925 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005002642	lncRNA gene	Chr15:16335205-16438012 (-)
CBA/J	ENSMUSG00210004692	lncRNA gene	Chr15:16362388-16462539 (-)
DBA/2J	ENSMUSG00185003384	lncRNA gene	Chr15:16299103-16399265 (-)
FVB/NJ	ENSMUSG00205010527	lncRNA gene	Chr15:16192023-16297623 (-)
JF1/MsJ	ENSUMUG00000014475	lncRNA gene	Chr15:16478929-16480252 (-)
LP/J	ENSMUSG00230016502	lncRNA gene	Chr15:19804846-19903805 (-)
NOD/ShiLtJ	ENSMUSG00190002176	lncRNA gene	Chr15:16263767-16356409 (-)
NZO/HlLtJ	ENSMUSG00225024306	lncRNA gene	Chr15:20014190-20114411 (-)
PWK/PhJ	ENSLUMG00010014944	lncRNA gene	Chr15:16492535-16585519 (-)
SPRET/EiJ	ENSMSPG00010001043	lncRNA gene	Chr15:16740155-16855744 (-)
WSB/EiJ	ENSIUOG00005012143	lncRNA gene	Chr15:16295284-16388391 (-)

Homology

• Gene Tree
  Gm49162
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25

• Ensembl
  ENSMUSG00000114971 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114971	Ensembl Gene Model | MGI Sequence Detail	92475	C57BL/6J
transcript	ENSMUST00000228706	Ensembl | MGI Sequence Detail	1144	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm49162:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr133808	Chr15:19366089-19366094 (-)	29,416 bp