Gm49160 Gene Detail

Summary

• Symbol
  Gm49160
• Name
  predicted gene, 49160

• Feature Type
  lncRNA gene
• IDs
  MGI:6118582
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr15:19237835-19240367 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  186 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6118582	lncRNA gene	Chr15:19237835-19240367 (+)
129S1/SvImJ	ENSMUSG00200004409	lncRNA gene	Chr15:16246131-16248655 (+)
A/J	ENSMUSG00195011820	lncRNA gene	Chr15:16154062-16156582 (+)
AKR/J	ENSMUSG00220001688	lncRNA gene	Chr15:16068234-16070769 (+)
BALB/cJ	ENSMUSG00180009869	lncRNA gene	Chr15:16135922-16138442 (+)
C3H/HeJ	ENSMUSG00175002044	lncRNA gene	Chr15:16294881-16297401 (+)
C57BL/6NJ	ENSMUSG00215008178	lncRNA gene	Chr15:16180076-16182608 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005002641	lncRNA gene	Chr15:16270031-16272547 (+)
CBA/J	ENSMUSG00210004689	lncRNA gene	Chr15:16297689-16300209 (+)
DBA/2J	ENSMUSG00185003381	lncRNA gene	Chr15:16234378-16236898 (+)
FVB/NJ	ENSMUSG00205010518	lncRNA gene	Chr15:16127302-16129822 (+)
JF1/MsJ	ENSUMUG00000014544	lncRNA gene	Chr15:16316315-16318844 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190002222	lncRNA gene	Chr15:16198568-16201102 (+)
NZO/HlLtJ	ENSMUSG00225024286	lncRNA gene	Chr15:19949449-19951969 (+)
PWK/PhJ	ENSLUMG00010014969	lncRNA gene	Chr15:16417274-16419819 (+)
SPRET/EiJ	ENSMSPG00010001048	lncRNA gene	Chr15:16670284-16672829 (+)
WSB/EiJ	ENSIUOG00005012176	lncRNA gene	Chr15:16230126-16232653 (+)

Homology

• Gene Tree
  Gm49160
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000115352 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115352	Ensembl Gene Model | MGI Sequence Detail	2533	C57BL/6J
transcript	ENSMUST00000226570	Ensembl | MGI Sequence Detail	319	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;