Gm49135 Gene Detail

Summary

• Symbol
  Gm49135
• Name
  predicted gene, 49135

• Feature Type
  lncRNA gene
• IDs
  MGI:6118546
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:42984118-43004144 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  127 from dbSNP Build 142
• Strain Annotations
  30

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6118546	lncRNA gene	Chr14:42984118-43004144 (+)
129S1/SvImJ	ENSMUSG00200016545	lncRNA gene	Chr14:33156380-33171139 (-)
129S1/SvImJ	ENSMUSG00200016547	lncRNA gene	Chr14:32840914-32854188 (+)
A/J	ENSMUSG00195024684	lncRNA gene	Chr14:33946488-33961969 (-)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180044091	lncRNA gene	Chr14:33296909-33311546 (-)
C3H/HeJ	ENSMUSG00175027605	lncRNA gene	Chr14:35144504-35159128 (-)
C3H/HeJ	ENSMUSG00175033007	lncRNA gene	Chr14:34576592-34590139 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005049436	lncRNA gene	Chr14:42748770-42762363 (+)
CBA/J	no annotation
DBA/2J	ENSMUSG00185016239	lncRNA gene	Chr14:38511126-38547776 (-)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000039004	lncRNA gene	Chr14:46949050-46963811 (-)
JF1/MsJ	ENSUMUG00000039764	lncRNA gene	Chr14:49339635-49354316 (-)
JF1/MsJ	ENSUMUG00000034121	lncRNA gene	Chr14:46474864-46489617 (-)
JF1/MsJ	ENSUMUG00000034219	lncRNA gene	Chr14:45909811-45924640 (+)
JF1/MsJ	ENSUMUG00000039064	lncRNA gene	Chr14:47097066-47110104 (-)
JF1/MsJ	ENSUMUG00000039297	lncRNA gene	Chr14:48156066-48165094 (-)
JF1/MsJ	ENSUMUG00000034150	lncRNA gene	Chr14:48456498-48471351 (-)
JF1/MsJ	ENSUMUG00000039555	lncRNA gene	Chr14:48622304-48622957 (-)
JF1/MsJ	ENSUMUG00000034172	lncRNA gene	Chr14:48912435-48927290 (-)
JF1/MsJ	ENSUMUG00000034192	lncRNA gene	Chr14:49173484-49188331 (-)
JF1/MsJ	ENSUMUG00000034263	lncRNA gene	Chr14:49712654-49727519 (+)
JF1/MsJ	ENSUMUG00000041716	lncRNA gene	Chr14:50152048-50166799 (+)
JF1/MsJ	ENSUMUG00000040148	lncRNA gene	Chr14:50368728-50383596 (-)
JF1/MsJ	ENSUMUG00000040221	lncRNA gene	Chr14:50437851-50438509 (-)
JF1/MsJ	ENSUMUG00000038468	lncRNA gene	Chr14:45760475-45775363 (+)
JF1/MsJ	ENSUMUG00000038351	lncRNA gene	Chr14:45153578-45258495 (+)
JF1/MsJ	ENSUMUG00000034240	lncRNA gene	Chr14:46242421-46257138 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190045644	lncRNA gene	Chr14:33416808-33417205 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010035281	lncRNA gene	Chr14:21338197-21351328 (+)
SPRET/EiJ	ENSMSPG00010003785	lncRNA gene	Chr14:35346315-35355984 (+)
SPRET/EiJ	ENSMSPG00010003783	lncRNA gene	Chr14:36475319-36490959 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm49135
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33

• Ensembl
  ENSMUSG00000115262 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115262	Ensembl Gene Model | MGI Sequence Detail	20027	C57BL/6J
transcript	ENSMUST00000373516	Ensembl | MGI Sequence Detail	1017	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;