Gm49120 Gene Detail

Summary

• Symbol
  Gm49120
• Name
  predicted gene, 49120

• Feature Type
  lncRNA gene
• IDs
  MGI:6118522
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:48827811-48836234 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  266 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6118522	lncRNA gene	Chr14:48827811-48836234 (+)
129S1/SvImJ	ENSMUSG00200017294	lncRNA gene	Chr14:37666166-37671988 (+)
A/J	ENSMUSG00195025612	lncRNA gene	Chr14:37872270-37878094 (+)
AKR/J	ENSMUSG00220040693	lncRNA gene	Chr14:37246646-37252475 (+)
BALB/cJ	ENSMUSG00180047896	lncRNA gene	Chr14:37480520-37486344 (+)
C3H/HeJ	ENSMUSG00175029068	lncRNA gene	Chr14:39160878-39166706 (+)
C57BL/6NJ	ENSMUSG00215039562	lncRNA gene	Chr14:37849434-37855243 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005010991	lncRNA gene	Chr14:39652364-39658235 (+)
CBA/J	ENSMUSG00210043330	lncRNA gene	Chr14:37806031-37811859 (+)
DBA/2J	ENSMUSG00185056332	lncRNA gene	Chr14:42579898-42585735 (+)
FVB/NJ	ENSMUSG00205047099	lncRNA gene	Chr14:37008901-37014721 (+)
JF1/MsJ	ENSUMUG00000053967	lncRNA gene	Chr14:54625263-54631070 (+)
LP/J	ENSMUSG00230053228	lncRNA gene	Chr14:54833865-54839672 (+)
NOD/ShiLtJ	ENSMUSG00190047645	lncRNA gene	Chr14:37483097-37488913 (+)
NZO/HlLtJ	ENSMUSG00225052353	lncRNA gene	Chr14:45101584-45107432 (+)
PWK/PhJ	ENSLUMG00010040858	lncRNA gene	Chr14:37078693-37084520 (+)
SPRET/EiJ	ENSMSPG00010003322	lncRNA gene	Chr14:40430534-40436455 (+)
WSB/EiJ	ENSIUOG00005040368	lncRNA gene	Chr14:37374558-37380389 (+)

Homology

• Gene Tree
  Gm49120
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000115636 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115636	Ensembl Gene Model | MGI Sequence Detail	8424	C57BL/6J
transcript	ENSMUST00000228323	Ensembl | MGI Sequence Detail	2967	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;