Gm49112 Pseudogene Detail

Summary

• Symbol
  Gm49112
• Name
  predicted gene, 49112

• Feature Type
  pseudogene
• IDs
  MGI:6118512
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:13481435-13481723 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  123 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6118512	pseudogene	Chr15:13481435-13481723 (+)
129S1/SvImJ	ENSMUSG00200004279	pseudogene	Chr15:10467675-10467963 (+)
A/J	ENSMUSG00195011705	pseudogene	Chr15:10372741-10373029 (+)
AKR/J	ENSMUSG00220001731	pseudogene	Chr15:10300708-10300996 (+)
BALB/cJ	ENSMUSG00180009664	pseudogene	Chr15:10398037-10398325 (+)
C3H/HeJ	ENSMUSG00175001968	pseudogene	Chr15:10555171-10555459 (+)
C57BL/6NJ	ENSMUSG00215008009	pseudogene	Chr15:10414434-10414722 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005002601	pseudogene	Chr15:10510709-10510997 (+)
CBA/J	ENSMUSG00210004734	pseudogene	Chr15:10540171-10540459 (+)
DBA/2J	ENSMUSG00185003409	pseudogene	Chr15:10497275-10497563 (+)
FVB/NJ	ENSMUSG00205010537	pseudogene	Chr15:10353738-10354026 (+)
JF1/MsJ	ENSUMUG00000013677	pseudogene	Chr15:10596540-10596828 (+)
LP/J	ENSMUSG00230015943	pseudogene	Chr15:13959984-13960272 (+)
NOD/ShiLtJ	ENSMUSG00190002123	pseudogene	Chr15:10438587-10438875 (+)
NZO/HlLtJ	ENSMUSG00225024189	pseudogene	Chr15:14192071-14192359 (+)
PWK/PhJ	ENSLUMG00010015094	pseudogene	Chr15:10660200-10660488 (+)
SPRET/EiJ	ENSMSPG00010001013	pseudogene	Chr15:10700374-10700662 (+)
WSB/EiJ	ENSIUOG00005012067	pseudogene	Chr15:10468458-10468746 (+)

Homology

• Gene Tree
  Gm49112
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000115703 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115703	Ensembl Gene Model | MGI Sequence Detail	289	C57BL/6J
transcript	ENSMUST00000227027	Ensembl | MGI Sequence Detail	289	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm49112:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr130756	Chr15:13481411-13481414 (+)	-22 bp